Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20poae_20[genbank_20GCA_5F001675295.1_202016-06-22] 181 sequences; 46,476,831 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 seq1 145 7e-30 seq2 120 3e-22 >seq3 Length=8783590 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | ||||| || || || ||||||||| ||||| ||||| Sbjct 6944315 ACCACCACCACGGAGGCGGAGGACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 6944374 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | |||||||| | || ||||||||||| || || || || || ||||| ||||||| Sbjct 6944375 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 6944434 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 ||||| || |||||||||| ||| || ||| ||| | | | |||||| |||| Sbjct 6944435 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCAATGGTGTCGGAAGACT 6944493 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 6944494 CCACCTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCATG 6944546 >seq1 Length=11790407 Score = 145 bits (160), Expect = 7e-30 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| || ||||||||| ||||| ||||||||| Sbjct 6428052 CCACCACGGAGACGGAGAACAAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 6427993 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || |||||||||||||| ||||| |||| ||||||||||||| |||| Sbjct 6427992 AGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGGGGA 6427933 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 6427932 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCCGAGGACTCGA 6427875 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 |||| | || || || || |||||||| ||||| |||||| Sbjct 6427874 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 6427834 >seq2 Length=9166667 Score = 120 bits (132), Expect = 3e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || || |||||| || || || ||||||||| Sbjct 2678442 CCACCACGAAGGCGGAGGACGAGATGGAGGGTTGACTCCTTTTGGATATTGTAGTCGGAG 2678501 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||||||||| |||| ||||| ||||| | ||| Sbjct 2678502 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 2678561 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| | || | ||| || | || | ||| || |||||| Sbjct 2678562 ATGCCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATAGTATCAGAGGACTCC 2678618 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || || ||||| ||||| || |||||| Sbjct 2678619 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 2678669 Score = 102 bits (112), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| || || |||||||| ||||| || | || || ||||||||||| ||||| Sbjct 2678249 CTCCTTCTGGATATTGTAGTCGGAAAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAA 2678308 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| ||||| ||||| | |||| | ||||| ||| ||| || ||| ||| Sbjct 2678309 AATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGACTT-GACGT 2678367 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| ||||||||||| | || || || || || || || ||||| | Sbjct 2678368 TGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 2678427 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 2678428 CGAAGATCTGCAT 2678440 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || || || ||||||||||||||| |||||||| Sbjct 2677931 GCCACCTCGGAGGCGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGA 2677990 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || || ||||||||||| || || || || ||||| ||||| | || Sbjct 2677991 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGAGG 2678050 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||| ||| ||| || ||| ||| | | | ||||| ||||||| Sbjct 2678051 AATACCTTCCTTATCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCAGAAGACTCCA 2678109 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||| | || || || || || || || ||||| |||| Sbjct 2678110 CCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 2678148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302954037200