Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq221 233 2e-56
seq174 145 8e-30
seq46 140 3e-28
seq61 129 6e-25
>seq221
Length=98460
Score = 233 bits (258), Expect = 2e-56
Identities = 549/815 (67%), Gaps = 28/815 (3%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||| | |||||| | || ||
Sbjct 71765 ATCTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACAGCTGAGGAGATCGATCTC 71824
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACA-ACGAGCGCCATTTCATCAA 116751
|||||||| ||||||| | || ||| | || |||||| | ||||||
Sbjct 71825 TCCAAGGATCTTCACGACTGGAACAACCGTCTGA-CTTCAGACGAGCAATACTTCATCTC 71883
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || || || ||||| ||| ||| ||||||||||||||||| || || |||||
Sbjct 71884 CCACATTCTTGCTTTCTTCGCTGCCTCCGATGGCATCGTCAACGAGAACCTCGTTGAGCG 71943
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
|||| ||||| ||| | ||||||| || |||||||| ||||| |||||| ||
Sbjct 71944 TTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGCTTCCAGATCATGAT 72003
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC-----GTGCGCTCT 116926
||||||| | ||||| |||| || || ||||| ||||| ||| | | ||
Sbjct 72004 GGAGAACATCCACTCCGAAACATACTCCCTGCTCATTGACACCTACATCAAGGACCCTGC 72063
Query 116927 TCGGAGGAGA-AGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985
|| | | | | | ||| || |||||| | || || || || ||| || | ||||
Sbjct 72064 TCAGCGCACATACCTC------TTCAACGCCGTTGACACCATTCCTTGCATCCGAAAGAA 72117
Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045
||| || ||||| | || |||||| | || | | |||| | |||| || ||
Sbjct 72118 GGCGGATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGTCTTGT 72177
Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105
|| || || || || ||||| ||||||| || || || |||| || |||||
Sbjct 72178 AGCTTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTTGCTTCCATCTTCTGGCT 72237
Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165
|||||| |||||||||||||| || |||| || ||||||||||||||| | || ||
Sbjct 72238 CAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATCTCTCGTGATGA 72297
Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGAC---CGAG 117222
|||||| || ||||||||||| | | |||| | | | || ||| | ||
Sbjct 72298 GGGTCTTCACACTGACTTTGCCTGCCTCC--TTCACTC-TCACCTCAAGGGACGTGCCAG 72354
Query 117223 CGCGGCG-CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
| | | ||| ||| || ||||||| || || |||| |||||| ||||| |
Sbjct 72355 CAAACAGATGATTCA-GGAAATTATCACCGATGCCGTTACCATTGAGCAGGAGTTCCTTA 72413
Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340
| || || || || |||| |||||| || | || | | | ||| ||| ||||||
Sbjct 72414 CTGAGGCTCTCCCTTGTGC-TCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATC 72472
Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400
||||||||||| || | || || ||| || | | || ||| ||||| | ||
Sbjct 72473 GAGTTCGTCGCTGATCGTCTCCTCGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCTACC 72532
Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC-CTTGG 117434
||||| | ||||| ||| | |||||| |||||
Sbjct 72533 AACCCCTTCGACTTCATGGAGAACATCTCTCTTGG 72567
>seq174
Length=222900
Score = 145 bits (160), Expect = 8e-30
Identities = 164/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | ||
Sbjct 54509 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 54450
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| ||||| |||||||| ||| | |||||
Sbjct 54449 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCA 54391
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||| | || | ||| ||||| || || || || | || |||||| |||||||||
Sbjct 54390 GCAGCGATTGATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTCTCCGACTACAA 54331
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||| |||||||| |||| || ||||| ||| | |||
Sbjct 54330 CATTCAGAAGGAATCCACACTCCATCTCGTGCTTCGC 54294
Score = 136 bits (150), Expect = 4e-27
Identities = 148/194 (76%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| ||||||||| |||| ||||| | |||||| | |
Sbjct 54212 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCG 54153
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| ||||| || |||| ||||| ||||||||||| | |||||||| || ||
Sbjct 54152 ACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTT 54094
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| || || || ||||| || |||| || |||||| |||||||||||||||||||
Sbjct 54093 ATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAG 54034
Query 40879 GAGGCCACGCTGCA 40892
||| | || || ||
Sbjct 54033 GAGTCGACTCTTCA 54020
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| ||||||||| |||| || || | |
Sbjct 54737 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCATCT 54678
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | ||| || |||| ||||| ||||||||||| | ||||||
Sbjct 54677 GATACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 54618
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | || | ||| ||||| ||||| || |||| || |||||| || |||||
Sbjct 54617 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCTGATTACAAT 54558
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|| ||||||||| |||| || ||||| ||| | |||
Sbjct 54557 ATTCAGAAGGAGTCCACACTCCATCTCGTGCTTCGC 54522
>seq46
Length=272426
Score = 140 bits (154), Expect = 3e-28
Identities = 155/204 (76%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || || |||||| | || || || | ||
Sbjct 234185 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 234126
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || || | ||||| ||||| |||||| |||||||
Sbjct 234125 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 234067
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||| |||| || || || ||||| || || | |||||||| | |||||||||
Sbjct 234066 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 234007
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| |||| || ||
Sbjct 234006 CATCCAGAAGGAGTCCACCCTTCA 233983
>seq61
Length=421038
Score = 129 bits (142), Expect = 6e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| | | |||| | |
Sbjct 258551 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 258610
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| |||| ||||| ||| |
Sbjct 258611 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 258670
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | || |||||| |||||||||||||||||||
Sbjct 258671 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 258730
Query 40879 G 40879
|
Sbjct 258731 G 258731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216102244560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |