Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq174 107 2e-18 seq46 102 9e-17 >seq174 Length=222900 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||| | ||| | |||| |||||| |||||||||||||||| || || || |||| || Sbjct 54528 CACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGAGAGGGTTCGGCCGTCCTC 54587 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || | |||||||||||| | || | || |||||||||| | Sbjct 54588 GAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-T 54646 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | || | | | | || || || || || |||| |||||||| | Sbjct 54647 GAATCTTGGACTTCACATTGTCGATGGTATCAGATGACTCAACCTCGAGGGTGATGGTCT 54706 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || | ||||| || ||||| ||||| Sbjct 54707 TGCCGGTCAAGGTCTTGACGAAGATCTGCAT 54737 Score = 105 bits (116), Expect = 8e-18 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| ||||| || | | ||| | ||||| || | || |||||| || || ||||| Sbjct 53989 CTACTGTCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTA 54048 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || | || || || |||| || |||||||||||||| || || || ||||||||||| Sbjct 54049 GTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTC 54108 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTC 43127 | || | || |||||||||| ||| | || | |||| ||| | | | |||||| | Sbjct 54109 AGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAC 54166 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 || || || |||| |||||||| ||||| || || ||||| || Sbjct 54167 GACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 54210 Score = 102 bits (112), Expect = 9e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||| | ||| | |||| ||||| ||||| ||||| || | || || || | || || Sbjct 54300 CACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTC 54359 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || ||||| || | |||||||||||| | || | || |||||||||| | Sbjct 54360 GAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC-T 54418 Query 43094 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 || | || | |||| ||| | | | |||||| || || || |||| |||||||| Sbjct 54419 GAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTC 54477 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| || ||||| ||||| Sbjct 54478 TTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509 >seq46 Length=272426 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| || ||| || || | || || Sbjct 233977 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 234036 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||||||||| || || |||||||||||||| | || | | |||||||||| | Sbjct 234037 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 234096 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || |||| ||| | | | |||||| || ||||| || | ||||| || || Sbjct 234097 ATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 234155 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| || || || ||||| Sbjct 234156 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 234185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814161946680