Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq174 113 3e-20 seq61 89.7 3e-13 >seq174 Length=222900 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||| || ||| | || || | |||||||| ||||| Sbjct 54318 TTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAA 54377 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | ||||||||||| ||| | || ||||||||| ||||| ||| | | Sbjct 54378 AATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 54437 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| || ||||| || | |||||||| ||||| ||||| || || || Sbjct 54438 GTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGAC 54497 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 54498 GAAGATCTGCAT 54509 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||| || || || ||| |||| || | ||||||||| |||||| Sbjct 54547 TCCTTCTGAATATTGTAATCAGAGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 54606 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | || ||||||||| ||||| ||| | || | Sbjct 54607 ATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTG 54666 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | || || || || | |||||||| |||||||| | || || || Sbjct 54667 TCGATGGTATCAGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACG 54726 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 54727 AAGATCTGCAT 54737 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | ||| || ||||| |||||||||||||| Sbjct 53995 TCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 54054 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | |||||| || || || || || ||||||||||| || Sbjct 54055 GAGGGTTCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGG 54114 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | || | |||| ||| ||||| Sbjct 54115 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGAC 54174 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | |||||||| ||||| ||||| || || || Sbjct 54175 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 54210 >seq61 Length=421038 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || ||| | || || | ||||||||| ||||| || Sbjct 258729 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 258670 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | |||||||| || ||| | || ||||||||| ||||| ||| | || | | Sbjct 258669 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 258610 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | || | || ||||| || | |||||||| ||||| || || || ||||| || Sbjct 258609 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 258551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070106091360