Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq46 120 2e-22
seq174 104 2e-17
seq61 95.1 1e-14
>seq46
Length=272426
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| ||||||||| |||||||||||| |||| ||| | || ||
Sbjct 233977 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 234036
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| ||||| || || | |||||||||||||
Sbjct 234037 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 234096
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| ||||||||
Sbjct 234097 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 234156
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| || || || |||||| |||||
Sbjct 234157 CCCGTGAGGGTCTTGACGAAAATCTGCATGATGCCT 234192
>seq174
Length=222900
Score = 104 bits (114), Expect = 2e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202
||||||||||||||||||||| || | ||| ||| ||| ||||| || ||||||
Sbjct 54319 TCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG---AGTTGCTTGCCGGCG 54375
Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262
|| ||||| ||||| ||||| || || | |||||||||||| ||| || ||| ||
Sbjct 54376 AAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACG 54435
Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322
| | | |||| ||| ||||| | ||| || |||||||| || || |||||
Sbjct 54436 TTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTG 54495
Query 45323 ACAAAGATTTGCAT 45336
|| ||||| |||||
Sbjct 54496 ACGAAGATCTGCAT 54509
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| || ||| |||| ||
Sbjct 54014 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCG 54073
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| ||||| ||||| | |||||||||||| |
Sbjct 54074 AGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 54133
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| ||| ||||| | ||| || ||||||
Sbjct 54134 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 54193
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || || ||||| ||
Sbjct 54194 CCAGTGAGGGTCTTGAC 54210
>seq61
Length=421038
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/184 (72%), Gaps = 6/184 (3%)
Strand=Plus/Minus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203
||||||| |||||||||||| || | ||| ||| ||| || || || |||||||
Sbjct 258731 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG---AGCTGCTTGCCGGCGA 258675
Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263
| ||||| ||||| || || || || | |||||||||||| || || ||| ||
Sbjct 258674 AGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACAT 258615
Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323
| | | ||||| | ||| ||||| | ||| || |||||||||||||| |||||||
Sbjct 258614 TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 258555
Query 45324 CAAA 45327
| ||
Sbjct 258554 CGAA 258551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395072883995101
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |