Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq51 282 4e-71 seq174 98.7 9e-16 seq46 91.5 1e-13 >seq51 Length=398837 Score = 282 bits (312), Expect = 4e-71 Identities = 635/949 (67%), Gaps = 4/949 (0%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| ||||| ||||| || || |||||| | ||| || || || Sbjct 43079 GAGGCAAGGTTGCAAACGGCGACCTCATCAGGGGCGCAGTACTCAATAATCTCAGTGCAC 43138 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | |||||||| || || ||||| |||| Sbjct 43139 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCC 43198 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||||| || || ||| | Sbjct 43199 TTGTAGAGCATGAAGGGGTTTCCGGTCTCTGTCTGGGCCTCGAGAATGGCGTACCAAAGT 43258 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 | ||||| | | | | | || ||| ||| ||| ||||||||||| ||||| || Sbjct 43259 TTTTGAGCCTTGATA-GACTTGCGACCCTTGCCCTCTCTCTCGTACTTTTCGTACAGAGC 43317 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 ||||| || ||||||| ||||| || || || || | | | || ||||| ||| | Sbjct 43318 CTCAAACTCATCACCGTAGCAGTCAGCAAGACCAGGGCACTCGTTGGGGCACATAAGAGT 43377 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || || || || || |||| || ||||| || ||||| |||||| ||| Sbjct 43378 CCATTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGAGCGAGGAA 43437 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 ||| || || ||||| |||||||| || ||| ||||||| | ||| | || || || Sbjct 43438 CAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAA 43497 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 ||||| || ||||| ||||| ||||||| ||| || || || |||| ||| || || || Sbjct 43498 GACGTCGGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCGGGTCGCTTGTTACCACC 43557 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||||||||| || ||||||||| |||| | ||||| || |||| ||||||||| Sbjct 43558 CTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 43617 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | || || || | || || | || || | ||| | | || || Sbjct 43618 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCATTCAAGCC 43677 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| || || || ||||| |||||||| || || Sbjct 43678 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGAGTATCGTAGATACCATC 43737 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG-CGCTTTGGGCGTAG 23744 ||||||||||| || | | || | ||| || || || | ||| ||| |||| ||| Sbjct 43738 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGATAGTTGAGGCTGTGGG-GTAC 43796 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACG 23804 |||| ||| | || ||||| || || || ||| | | ||||| || ||||| | Sbjct 43797 CGGCGTTGAATAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATG 43856 Query 23805 TGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGT 23864 | || | | | ||||| | || || ||||||| ||||| ||||| ||||| | Sbjct 43857 TTTCCAAGACACGCTCAATATTGTCACCCCAGATACCGACAGCGACTCGCATGATCATAT 43916 Query 23865 ATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTT 23924 || || | |||| | | ||||| ||| | | ||||| | || || Sbjct 43917 GCTGCGGGCGCTCGGCAATTTTGCCGTCAATCTGTAGAAGATAGCTTCTAGACAGGGTCC 43976 Query 23925 TAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | || |||||||| | ||||||||||| | ||||| || ||||| || Sbjct 43977 TGAAACCAAAATAATTGTAGTTAAAGTCCCTATCGTAGACAATGGCGGA 44025 Score = 89.7 bits (98), Expect = 5e-13 Identities = 283/430 (66%), Gaps = 13/430 (3%) Strand=Plus/Plus Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAA--TG 22298 |||| |||||| ||| ||||| || || || || || || ||||| | | ||| || Sbjct 42293 TTGAGAGACTGAGACTGGTCGATGAAGGCACCACGGTCCGCAGCCATCTGCA-CAACCTG 42351 Query 22299 TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATT 22358 | ||| || || ||||| || ||||||||||| | |||| || || || Sbjct 42352 T-CGCTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATATCGGCAGGGATGTTGG 42410 Query 22359 CGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACA 22418 ||| |||||| || || || ||||| || || || |||| ||| | Sbjct 42411 GGATGTTCTGGATAGAACCACCATCAGCAATGATACGGTTCTTCATACCATCGGACCAAA 42470 Query 22419 AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACA 22478 ||| ||| || | ||| |||| || |||| || ||||| |||||||| | | Sbjct 42471 GACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACTTGGAACTCGCCAGCAA 42530 Query 22479 AGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTA 22538 ||| ||||||||||| |||||||| ||| | || ||||| | || ||||| || || | Sbjct 42531 GGACTCGGCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAA 42590 Query 22539 TCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGT--G 22596 |||| | ||| ||| || ||||| || || | || || ||| | | |||| | Sbjct 42591 TCTGCGAGGTACTAGCAGTGGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAG 42650 Query 22597 CTTTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGT 22655 |||| || | ||| ||| || ||| ||||| ||||| || ||| | ||||| Sbjct 42651 TCTTGACATCCT-CTCGGAGAGATTC--CCACTCCCAAAGATCAGAGGGCTTGACATT-- 42705 Query 22656 CCCACATATC 22665 ||||||||| Sbjct 42706 -CCACATATC 42714 >seq174 Length=222900 Score = 98.7 bits (108), Expect = 9e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || |||||| |||| || || ||||||||| ||| Sbjct 54212 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCG 54153 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||||||||| ||| | || || ||||||||||| || | Sbjct 54152 ACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTTA 54093 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | || ||||| || ||| | || ||| | || | ||| || ||||| || || | Sbjct 54092 TCTTTGCTGGTAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAGG 54033 Query 31383 AATCGACTCTTCATCTGGTACT 31404 | ||||||||||| |||| || Sbjct 54032 AGTCGACTCTTCACTTGGTCCT 54011 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || |||||||| || |||||| |||| || || | ||| Sbjct 54509 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 54450 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 54449 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 54390 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| || | || || || | ||| || ||| Sbjct 54389 CAGCGATTGATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTCTCCGACTACAAC 54330 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || ||||| || ||| | || | || |||| Sbjct 54329 ATTCAGAAGGAATCCACACTCCATCTCGTGCTTCGCCTTCGTGGTGGTA 54281 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || |||||| |||| ||||| | || Sbjct 54738 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCATC 54679 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || | || ||||||||| ||| | || || ||||| Sbjct 54678 TGATACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 54619 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | || ||| || | ||||| || Sbjct 54618 GCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCTGATTACAA 54559 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || ||||| || ||| | || | || |||| Sbjct 54558 TATTCAGAAGGAGTCCACACTCCATCTCGTGCTTCGCCTTCGTGGAGGTA 54509 >seq46 Length=272426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 234186 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 234127 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| || | || || ||||| Sbjct 234126 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 234067 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 234066 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 234007 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || ||||| |||| || Sbjct 234006 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 233974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763719829520