Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq51 122 1e-22 >seq51 Length=398837 Score = 122 bits (134), Expect = 1e-22 Identities = 386/589 (66%), Gaps = 16/589 (3%) Strand=Plus/Plus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 63007 || || || || || ||||| ||||||| || | ||| || | || ||||||||||| Sbjct 43079 GAGGCAAGGTTGCAAACGGCGACCTCATCAGGGGC-GCAGTACTCAATAATCTCAGTGCA 43137 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 || || | ||| || || | || | ||| || ||||| ||| || ||| Sbjct 43138 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATC 43197 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || ||||| || | || || || |||| | || | ||| || | ||| | Sbjct 43198 CTTGTAGAGCATGAAGGGGTTTCCGGTCTCTGTCTGGGCCTCGAGAATGGCGTACCAAAG 43257 Query 63128 GACTCGAGCCTTTATTATAGATTTGTATCTCCTT----TCTCTTTCGTA--TAGAGTATA 63181 | ||||||| || ||| ||| | |||| ||||| ||||| | ||| | Sbjct 43258 TTTTTGAGCCTTGAT---AGACTTGCGAC-CCTTGCCCTCTCTCTCGTACTTTTCGTACA 43313 Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CTAGGACATTCATCCGGACACA 63240 | | || ||||| || || | || | ||| | ||| || || | || |||| Sbjct 43314 GAGCC--TCAAACTCATCACCGTAG-CAGTCAGCAAGACCAGGGCACTCGTTGGGGCACA 43370 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 | | | ||| || |||| | || || || ||||| ||||||||||| |||||||||| Sbjct 43371 TAAGAGTCCATTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGAG 43430 Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 | | || || || | | | ||||| || || |||||| ||||| |||| Sbjct 43431 CGAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGA 43490 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 || | | | || | ||||| || || | ||| ||||| | | || || || |||| Sbjct 43491 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCGGGTCGCTTGT 43550 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 | || ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||| Sbjct 43551 TACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATAC 43610 Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT 63529 |||| || ||||||||||||||| ||| || ||| ||||||| || Sbjct 43611 CGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT 43659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813813221680