Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq51 163 4e-35 seq221 127 3e-24 >seq51 Length=398837 Score = 163 bits (180), Expect = 4e-35 Identities = 952/1507 (63%), Gaps = 37/1507 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| || ||||| |||| || | | ||||| || |||||||| || || || ||| Sbjct 42167 GTGAACTGGATGGGGGCGGCAGCAGCCTGTGTACGGAGGTAGTACATGCCGGTCTTGAGA 42226 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 ||||| |||| || ||| ||||| || || | ||| | || || || Sbjct 42227 CCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATTGTAGGGTCCTTCATG 42286 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || || | ||| ||| || ||||||||||| || | ||| |||||||| | | Sbjct 42287 TGAATGTTGAGAGACTGAGACTGGTCGATGAAGGCACCACGGTCCGCAGCCATCTGCACA 42346 Query 78898 ATC-GTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956 | | ||| | | | ||| ||||| | ||| || || | ||| ||||| | || | Sbjct 42347 ACCTGTCGCT-GAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATATCGGCAGGGAT 42405 Query 78957 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 ||| | | ||||| || || |||||||| || || || | ||||| || | || Sbjct 42406 GTTGGGGATGTTCTGGATAGAACCACCATCAGCAATGATACGGTTCTTCATACCATCGGA 42465 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| | | ||| | | | | || || || || || ||||| || || || Sbjct 42466 CCAAAGACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACTTGGAACTCGCC 42525 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 || | |||| || ||| || || ||| || || || | | || || || || Sbjct 42526 AGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCC 42585 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | ||| || | || || || |||||||| || || | | ||| || | | ||| Sbjct 42586 AAGAATCTGCGAGGTACTAGCAGTGGGCATAGGAGCAACGAGCAGACTGTTGCGGATACC 42645 Query 79194 GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 || | ||| | ||| ||||||||||| |||||||||||||| || ||||| Sbjct 42646 GTGAGTCTTGACATCCTCTCGGAGAGATTCCCACTCCCAAAGATCAGAGGGCTTGACATT 42705 Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313 ||| | |||| | || ||||| || | | || || || || | || || || Sbjct 42706 CCACATATCAAACTGGAGAATGCCCTCAGAGGCAGGAGAGCCCTTGAAGGTGGAGTAGGG 42765 Query 79314 TCCTTCCTTTTCGGCTAATT-CACAACTCGCCTCTAATG-CTCCGTAATAAATGGTTTCG 79371 || |||| | ||| | | |||| | ||| | | ||| |||||| || ||| Sbjct 42766 ACCCTCCTCCTTGGCGAGCTGCACAGA--GGTAGTAAGGGCAGCGTGATAAATAGTCTCG 42823 Query 79372 AAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG-AAT 79430 || || | ||| || || || | || || | ||||| || | |||| || Sbjct 42824 AAGATTTGCTTGTTCAGCTCACGAGCCTCGGGAGACTCAAAGGGC-ATGCGGAGAGCAAG 42882 Query 79431 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAAT 79490 || || || || | ||||| ||||| | ||| || |||| || | | | || | | Sbjct 42883 GAAGGCATCAGCAAGACCTTGGACACCGAGACCAATGGGTCGGTGACGCATGTT-GCTGT 42941 Query 79491 TTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTA 79549 | | ||| ||| ||| ||| || | || | || ||||| || || | || | ||| | Sbjct 42942 TGCGAGCCTCTTGAACAGGGTAGTGGTTGACGTCGATAATCTTGTTCAAGTTGCGGACAA 43001 Query 79550 TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTACAAACATGT 79609 |||| || || | ||| || || || | | ||||| || | || Sbjct 43002 CGACTTGAGTGACTTCGTGTAGCTTCTTGAAGTCGTAGCAAGCATCTT---CATAGTTGA 43058 Query 79610 TCAACGC-------GACA--GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA- 79659 | || | |||| || || || || |||||||| ||||||| || | ||| Sbjct 43059 TGAAAGAAGGCAGAGACAAGGAGGCAAGGTTGCAAACGGCGACCTCATCAGGGGC-GCAG 43117 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 || | || || |||||||| ||||| | ||||| || | || | ||| || Sbjct 43118 TACTCAATAATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTG 43177 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||||| ||| || |||||| || || ||||| || | || || || |||| | Sbjct 43178 CTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTTCCGGTCTCTGTCTGGGCC 43237 Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTT---TCT 79836 || | ||| || | ||| | | ||||||| || ||||||| | ||| ||| Sbjct 43238 TCGAGAATGGCGTACCAAAGTTTTTGAGCCTTGAT---AGACTTGCGACCCTTGCCCTCT 43294 Query 79837 CTTTCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAG 79894 || ||||| | | ||| | | | || ||||| || || | || | | |||| Sbjct 43295 CTCTCGTACTTTTCGTACAGAGCC--TCAAACTCATCACCGTAGCAGTCAGCAAGACCAG 43352 Query 79895 GACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGA 79954 | || |||| || ||||| | | ||| || || | | || || || ||||| |||| Sbjct 43353 GGCACTCGTTGGGGCACATAAGAGTCCATTCGCCGTTCTTCTCGACACGCTTCATGAAGA 43412 Query 79955 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 80014 ||||||| ||||||||||| | || || || | | | |||||| || || | Sbjct 43413 GATCAGGGATCCAAAGAGCGAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGT 43472 Query 80015 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 80074 ||||| ||||| |||||| | | | || | ||||| || || | ||| ||||| | Sbjct 43473 TCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAAATGGCGA 43532 Query 80075 TAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134 | || ||||| ||||| || ||||| || | ||| | ||| ||||| || | || | Sbjct 43533 AGGCACCGGGTCGCTTGTTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACAC 43592 Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194 || ||| |||| ||||| ||||| ||||||||||| |||| ||| || ||| ||| Sbjct 43593 GCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGG 43652 Query 80195 CACGAAT 80201 |||| || Sbjct 43653 CACGGAT 43659 >seq221 Length=98460 Score = 127 bits (140), Expect = 3e-24 Identities = 357/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| |||||||| || | | || || ||||||||||| | || || ||||| ||||| Sbjct 72307 GTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCC 72248 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || ||||| || ||||| ||||| | ||| |||||||| || || || || Sbjct 72247 GCGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCCTCAACAGC 72188 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGTATCCA-CTTTTGAG 50149 ||||| || ||||| | || || || | |||| || ||||| | || | Sbjct 72187 AGCAAAAGCTACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGATG-G 72129 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 ||||||| ||||||||| | ||||| || || || | ||| || ||||| || | Sbjct 72128 CCCAATCCGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAGGTATGTGC 72069 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | | | || || | || || || || | || || |||| || || |||| Sbjct 72068 GCTGAGCAGGGTCCTTGATGTAGGTGTCAATGAGCAGGGAGTATGTTTCGGAGTGGATGT 72009 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || ||||| || || ||||| |||| |||||||| ||||| || || | Sbjct 72008 TCTCCATCATGATCTGGAAGCCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGC 71949 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 || || ||| | | || || || || || || || ||| || || || || | | Sbjct 71948 TGAAACGCTCAACGAGGTTCTCGTTGACGATGCCATCGGAGGCAGCGAAGAAAGCAAGAA 71889 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446 || || || | || |||| | || | | || ||||| || | | ||| | Sbjct 71888 TGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAGACGGTTGTTCCAGTCGTGAAGATCCT 71829 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | ||| | || || ||||||| || || ||||||||||| || ||||| | || Sbjct 71828 TGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGTACATTTGCC 71769 Query 50507 AGAT 50510 |||| Sbjct 71768 AGAT 71765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264481408840