Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq221 273 3e-68 seq51 136 6e-27 >seq221 Length=98460 Score = 273 bits (302), Expect = 3e-68 Identities = 580/847 (68%), Gaps = 29/847 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | || ||| ||||||| Sbjct 71765 ATCTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACAGCTGAGGAGATCGATCTC 71824 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | ||| ||||| | |||| | | || || || Sbjct 71825 TCCAAGGATCTTCACGACTGGAACAACCGTCTGACTTCAGACGAGCAATACTTCATCTCC 71884 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 |||||| | || ||||| || | ||||||||| ||||||||||| || || ||||| || Sbjct 71885 CACATTCTTGCTTTCTTCGCTGCCTCCGATGGCATCGTCAACGAGAACCTCGTTGA-GCG 71943 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | || || |||| ||| ||||| || || ||||| ||||||| Sbjct 71944 TTTCAGCGGCGAGGTCCAGATCCCCGAGG-CTCGATGCTTCTATGGCTTCCAGATCATGA 72002 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TC 125313 | |||||| | ||||| |||| ||||| || ||||||| ||||| || | Sbjct 72003 TGGAGAACATCCACTCCGAAACATACTCCCTGCTCATTGACACCTACATCAAGGACCCTG 72062 Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 | || || | | || ||||| ||||| | ||||| | || | || || || |||| Sbjct 72063 CTCAGCGCACATAC---CTCTTCAACGCCGTTGACACCATTCCTTGCATCCGAAAGAAGG 72119 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 | | |||| || || |||||| | ||| | || ||||| | || | | || || | Sbjct 72120 CGGATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCTCAGCGTCTTGTAG 72179 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | || || || || ||||| |||||||| ||| ||||| ||||||| ||||||| Sbjct 72180 CTTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTTGCTTCCATCTTCTGGCTCA 72239 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||||||| |||||||| || |||| |||||| | || ||||| || |||| Sbjct 72240 AGAAGCGCGGCCTCATGCCTGGTCTGAGCTTTTCCAACGAGCTCATCTCTCGTGATGAGG 72299 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613 | || ||| |||||||||| | | || ||| ||| | | | | || | | Sbjct 72300 GTCTTCACACTGACTTTGCC-TGC--CTCCTTC---ACTCT---CACCTCAAGGGACGTG 72350 Query 125614 CCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 ||||| | | | | ||| || ||| | ||||||||||| | || || || ||||| Sbjct 72351 CCAGCAAACAGATGATTCAGGAA-ATTATCACCGATGCCGTTACCATTGAGCAGGAGTTC 72409 Query 125673 CTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGAGTA 125731 || || || | || || | || || | |||||||||| ||| || ||| |||| Sbjct 72410 CTTACTGAGGCTCT-CCCTTGTGCTCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTA 72468 Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAA 125788 ||| ||||| || || |||||||| || || | ||| || ||| | ||||| Sbjct 72469 CATCGAGTTCGTCGCTGATCGTCTCCT---CGTCGCTCTCGGCAACGAGAAGGTGTACAA 72525 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 || | || ||||| || |||||| | ||| || || | || ||||||||||| || Sbjct 72526 GGCTACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGCAAGACCAACTTCTT 72585 Query 125849 CGAGAAG 125855 ||||||| Sbjct 72586 CGAGAAG 72592 >seq51 Length=398837 Score = 136 bits (150), Expect = 6e-27 Identities = 315/472 (67%), Gaps = 2/472 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| | ||| | || || |||||||| ||| Sbjct 43560 CAGGGTGGTAACAAGCGACCCGGTGCCTTCGCCATTTACCTTGAGCCATGGCACGCCGAC 43501 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || || | ||| Sbjct 43500 GTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGCGCTCGTGAC 43441 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || ||| | || ||| | ||||||||||| ||| | | ||| | Sbjct 43440 CTGTTCCTCGCTCTTTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGAA 43381 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || ||||| | || |||| || || |||||| Sbjct 43380 TGGACTCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCTGACTGCTACGGTGATGAGTTT 43321 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| |||||| ||||||| | || || | | || | || | Sbjct 43320 GAGGCTCTGTACGAAAAGTACGAGAGAGAGGGCAAGGGTCGCAAGTCTA-TCAAGGCTCA 43262 Query 97175 AGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 | |||| ||| | ||||| | ||| ||| |||||| |||| || | ||| ||||| Sbjct 43261 AAAACTTTGGTACGCCATTCTCGAGGCCCAGACAGAGACCGGAAACCCCTTCATGCTCTA 43202 Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 ||||||| | || ||||| ||||||||| || | || |||||| ||||||| Sbjct 43201 CAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTTGGTACCATCCGAAGCTCCAA 43142 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 |||||||| || ||| | |||||| | | || || ||| || |||||| Sbjct 43141 CCTGTGCACTGAGATTATTGAGTACTGCGCCCCTGATGAGGTCGCCGTTTGC 43090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054744381560