Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq174 89.7 4e-13
seq46 84.2 2e-11
>seq174
Length=222900
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| | ||| |||||| ||||| ||||||||||| || | | ||| | |||||
Sbjct 54300 CACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTC 54359
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| ||||| ||| || |||| || |||||||| || || | | |||||||||
Sbjct 54360 GAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 54419
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
||| || ||||| | | || ||||| |||| ||||| ||||| || |||||
Sbjct 54420 AATCTTGGACTTGACGTTGTCG--ATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTC 54477
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || ||||| || || || || ||||||||
Sbjct 54478 TTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509
>seq46
Length=272426
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || ||||| ||| |||||| || |||||||| || || | || || | |||||
Sbjct 233977 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTC 234035
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||||| | | || | |||||||| ||| || | || |||||||||
Sbjct 234036 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 234095
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||||| | ||||| |||| ||||||| ||| | || || || ||
Sbjct 234096 GATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 234155
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| || || || |||||||||||
Sbjct 234156 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 234185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421248730546481
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |