Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq128 107 3e-19
seq3 104 4e-18
>seq128
Length=186193
Score = 107 bits (118), Expect = 3e-19
Identities = 86/101 (85%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | ||||| |||||||| || || |||||||| |||||
Sbjct 128110 GCCAAGCGTCACCGCAAGATTT-TGCGAGACAACATCCAGGGTATTACCAAGCCCGCTAT 128168
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| |||||||||||||| ||||||||| ||||||
Sbjct 128169 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 128209
Score = 80.6 bits (88), Expect = 4e-11
Identities = 113/159 (71%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600
|| || |||| |||| |||| | |||| ||||||| || || |||| ||| || ||
Sbjct 128276 TACGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACGCCGTC 128335
Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660
||| || |||||||| || || ||||||||||| || | || |||| || || ||
Sbjct 128336 ACCTACACTGAGCACGCCAAGCGCAAGACTGTCACTTCTCTCGACGTCGTTTACGCCCTG 128395
Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| || || ||||| | | || ||||| || |||||
Sbjct 128396 AAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAA 128434
>seq3
Length=171713
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||||| | ||||| |||||||| || ||||| ||||| |||||
Sbjct 105012 GCCAAGCGTCACCGAAAGATCT-TGCGAGACAACATCCAGGGTATCACAAAGCCCGCTAT 104954
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| |||||||||||||| ||||||||| | ||||
Sbjct 104953 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 104913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074760218333
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |