Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq78 140 2e-28 seq221 93.3 3e-14 seq174 93.3 3e-14 >seq78 Length=7745 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2926 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2985 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2986 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3020 >seq221 Length=98460 Score = 93.3 bits (102), Expect = 3e-14 Identities = 201/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAA 6252 || || ||||| || ||||| ||| ||| ||||| ||||| |||| || || |||| Sbjct 7603 GATGCTTTCTATCGTTACAAGATGGAGCG--TCTGCAGACCAAGATCGAAGGCAAAGGAA 7660 Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAA--GTCGCTAAGGCGCTCGGACGCCC 6310 ||||||| || ||||| |||||||| | | | | || || | |||| || || Sbjct 7661 ACGGTATCAAGACCGTTGTTGTCAACCT--CAGCAGTGTAGCAGCCTCACTCGCCCGTCC 7718 Query 6311 TGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA 6370 | | ||||| | || || ||||| | ||||||||| ||||| || | |||| | Sbjct 7719 CGGCTCCTACGTCATCAAGTACTTCGGTTTCGAACTTGGTGCTCAAACCAACATTGACCC 7778 Query 6371 CAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACT 6430 ||| |||| || | ||| | ||||| | || | || | ||||| ||||| || Sbjct 7779 CAAGGACGACCGTTGGATCATCAACGGTGCCCACGATGCTCCTAAGCTCCAGGATCACCT 7838 Query 6431 TGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || ||||| || ||||||||| || || | ||| | ||||| |||||||| Sbjct 7839 CGATGGCTTCATCAACAAGTTTGTTCTCTGCAAAAAGTGCAAGAACCCCGAGACCGA 7895 >seq174 Length=222900 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||| | ||| || ||| |||||| ||||||||||||||||| | || |||| || Sbjct 54528 CACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGAGAGGGTTCGGCCGTCCTC 54587 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || ||||| || || | || || || || | |||| ||| || |||||| Sbjct 54588 GAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 54647 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||||||||| | || ||||| ||||| || | || || || || Sbjct 54648 AATCTTGGACTTCACATTGTCGATGGTATCAGATGACTCAACCTCGAGGGTGATGGTCTT 54707 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || |||||||| || ||||| ||||||||| Sbjct 54708 GCCGGTCAAGGTCTTGACGAAGATCTGCATG 54738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945236476711