Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq46 116 3e-21 seq174 107 2e-18 seq61 86.0 5e-12 >seq46 Length=272426 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| |||| ||||| ||||| | || Sbjct 234185 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 234126 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || |||||||||||||| || || || || Sbjct 234125 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 234066 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || || ||| | |||||| ||||||| | ||| |||||| Sbjct 234065 CAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 234006 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | || || || Sbjct 234005 ATCCAGAAGGAGTCCACCCTTCACTTGGT 233977 >seq174 Length=222900 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || | || Sbjct 54509 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 54450 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| ||||| || || || Sbjct 54449 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 54390 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| || | |||||| ||| ||| ||||||| |||||| Sbjct 54389 CAGCGATTGATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTCTCCGACTACAAC 54330 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || |||||||| Sbjct 54329 ATTCAGAAGGAATCCAC 54313 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| || || || || | | Sbjct 54737 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCATCT 54678 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || ||||| ||||||||||| || || || || || Sbjct 54677 GATACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 54618 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| ||| ||| |||| |||||||| Sbjct 54617 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCTGATTACAAT 54558 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| | ||| | || | || | || |||||| Sbjct 54557 ATTCAGAAGGAGTCCACACTCCATCTCGTGCTTCGCCTTCGTGGAGGT 54510 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || | |||| ||| | ||| | |||| Sbjct 54198 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGTCC 54139 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || || || || || || ||||| ||||| || || Sbjct 54138 AAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTTATCTTTGCTGGTAAG 54079 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| || ||| ||||||| |||||||| || || || || || Sbjct 54078 CAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCGAC 54026 >seq61 Length=421038 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || | | || ||| | Sbjct 258550 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 258609 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| || || || ||||| || || | Sbjct 258610 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 258669 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | |||||| ||| ||| ||||||| |||||||| || || Sbjct 258670 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 258729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725539475765