Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq221 150 4e-31
seq51 111 3e-19
seq169 98.7 2e-15
seq181 87.8 4e-12
>seq221
Length=98460
Score = 150 bits (166), Expect = 4e-31
Identities = 317/471 (67%), Gaps = 14/471 (3%)
Strand=Plus/Minus
Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601
|| || |||| ||||| |||||||| || | |||||| | |||||||| ||||
Sbjct 72609 TGGTAGTCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTCTCC 72550
Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661
||||||||||||||||| || || |||||| ||| | ||| || || |||| ||
Sbjct 72549 ATGAAGTCGAAGGGGTTGGTAGCCTTGTACACCTTCTCGTTGCCGAGAGCGACGAGGAGA 72490
Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721
|| || || || ||||| | ||||| ||| || | ||||||||||| | || | |
Sbjct 72489 CGATCAGCGACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGAGCA 72430
Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781
||||| | |||||| | ||| |||| || ||| ||| || || | |||| ||
Sbjct 72429 CAAGGGAGAGCCTCAGTAAGGAACTCCTGCTCAATGGTAACGGCATCGGTGATAATTTCC 72370
Query 251782 T---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAA 251837
| ||| ||| | | | || | || || | |||| ||||| | ||||
Sbjct 72369 TGAATCATCTGTTTGCTGGCACGTC----CCTTGAGGTGAGAGTGAAGGAGGCAGGCAAA 72314
Query 251838 CTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCAT 251897
| ||| |||||||| || ||| ||||| ||||||||| | | ||| ||||||||
Sbjct 72313 GTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGCTCAGACCAGGCAT 72254
Query 251898 CACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTC 251957
| || || ||| ||||||||||||| | ||||| ||| ||| | | ||||||
Sbjct 72253 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCCTC 72194
Query 251958 GACACACACCCATGCAACAAGGCGCTCAGCAAACGA------CTTGTCCTG 252002
||| | | || ||||| |||| |||||| || |||||||||
Sbjct 72193 AACAGCAGCAAAAGCTACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTG 72143
>seq51
Length=398837
Score = 111 bits (122), Expect = 3e-19
Identities = 417/643 (65%), Gaps = 11/643 (2%)
Strand=Plus/Plus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173
||| | ||| |||| ||||||||||| || ||||| | | | || |||| | ||
Sbjct 42301 CTGAGACTGGTCGATGAAGGCACCACGGTCCGCAGCCATCTGCACAACCTGTCG-CTGAG 42359
Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233
| ||||||||| |||||||||| ||||||| ||| | | | ||| | ||||
Sbjct 42360 AAATCTCCCACACAGTCTTGTACAGAGCCTTGATATCGGCAGGGATGTTGGGGATGTTCT 42419
Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACC-AAGTCCCACGA 293292
||||||| || || | ||||| || |||||||||| ||||||| ||| |||| |
Sbjct 42420 GGATAGAACCACCATCAGCAATGATACGGTTCTTCATACCATCGGACCAAAGACCCATG- 42478
Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352
| | || || || ||| | | ||||||||| ||||||| ||||| || ||
Sbjct 42479 TCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACTTGGAACTCGCCAGCAAGGACTCGG 42538
Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412
|| ||| ||||| || ||| ||| ||| ||| || |||||| |
Sbjct 42539 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAG 42598
Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACA 293469
||| || || |||||| ||||| |||| ||| | | ||| | ||||||||
Sbjct 42599 GTACTAGCAGTGGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACA 42658
Query 293470 CGCGATTCGAGACCCGCCCAGTCCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATA 293528
| | |||| |||| ||| | | || || || | ||| ||| | || | |
Sbjct 42659 TCCTCTCGGAGAGATTCCCACTCCCAAAGA-TCAGAGGGCTTGACATTCCACATATCAAA 42717
Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588
||| | || |||| ||||||||| |||| ||||||| | ||| || | ||| |
Sbjct 42718 CTGGAGAATGCCCTCAGAGGCAGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTT 42777
Query 293589 AGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647
| ||||| ||| ||| | || ||||| ||||| ||||||||| | ||
Sbjct 42778 GGCGAGCT-GCACAGAGGTAGTAAGGGCAGCGTGATAAATAGTCTCGAAGATTTGCTTGT 42836
Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707
| |||| ||||||| ||| ||||| ||||| || | ||| |||| |
Sbjct 42837 TCAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGAGCAAGGAAGGCATCAGCAA 42896
Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCT 293750
|||| || ||||| | ||||| ||| || ||||| |||||||
Sbjct 42897 GACCTTGGACACCGAGACCAATGGGTCGGTGACGCATGTTGCT 42939
>seq169
Length=232921
Score = 98.7 bits (108), Expect = 2e-15
Identities = 159/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| ||||| || || || |||| |||||||| || |||
Sbjct 54722 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 54781
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| |||||||||| | || || ||||| ||||||||| || |
Sbjct 54782 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 54841
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 54842 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 54900
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569
||||| | ||| || | || ||||||||| | |||||| ||
Sbjct 54901 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 54946
Score = 87.8 bits (96), Expect = 4e-12
Identities = 94/122 (77%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| || ||||| ||||| || ||| ||||| |||| | | ||
Sbjct 56124 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGACTGTCCTTGCCGCTT 56183
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | || || | |||||||| |||||||||||||||||||| |||||
Sbjct 56184 GCTCT-TGGCAGCGACCCCATCTCATCGTTCTTGACGAGCCTACCAACTATCTTGACCGT 56242
Query 280821 GA 280822
||
Sbjct 56243 GA 56244
>seq181
Length=132117
Score = 87.8 bits (96), Expect = 4e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| || |||||||| || |||||||||||||||||||| | | || || || || |
Sbjct 61485 AGTTGGATCTCTGTCTGGAGGTTGGAAGATGAAGCTGGCTTTGGCCCGTGCTATGCTGCA 61544
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
||| || |||||||| || ||||| || || || ||||| | ||| ||||| | ||
Sbjct 61545 GCGCGCTGATGTCCTTCTTCTTGACGAACCTACTAACCATCTTGACGTTGCCAACATCGC 61604
Query 279815 CTGGCTAGTGTCCTACCT 279832
||||| | | ||||||
Sbjct 61605 ATGGCTCGAGAACTACCT 61622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027830465634521
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |