Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq221 150 4e-31 seq51 111 3e-19 seq169 98.7 2e-15 seq181 87.8 4e-12 >seq221 Length=98460 Score = 150 bits (166), Expect = 4e-31 Identities = 317/471 (67%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | |||||||| |||| Sbjct 72609 TGGTAGTCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTCTCC 72550 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| || || |||||| ||| | ||| || || |||| || Sbjct 72549 ATGAAGTCGAAGGGGTTGGTAGCCTTGTACACCTTCTCGTTGCCGAGAGCGACGAGGAGA 72490 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 || || || || ||||| | ||||| ||| || | ||||||||||| | || | | Sbjct 72489 CGATCAGCGACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGAGCA 72430 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781 ||||| | |||||| | ||| |||| || ||| ||| || || | |||| || Sbjct 72429 CAAGGGAGAGCCTCAGTAAGGAACTCCTGCTCAATGGTAACGGCATCGGTGATAATTTCC 72370 Query 251782 T---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAA 251837 | ||| ||| | | | || | || || | |||| ||||| | |||| Sbjct 72369 TGAATCATCTGTTTGCTGGCACGTC----CCTTGAGGTGAGAGTGAAGGAGGCAGGCAAA 72314 Query 251838 CTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCAT 251897 | ||| |||||||| || ||| ||||| ||||||||| | | ||| |||||||| Sbjct 72313 GTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGCTCAGACCAGGCAT 72254 Query 251898 CACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTC 251957 | || || ||| ||||||||||||| | ||||| ||| ||| | | |||||| Sbjct 72253 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCCTC 72194 Query 251958 GACACACACCCATGCAACAAGGCGCTCAGCAAACGA------CTTGTCCTG 252002 ||| | | || ||||| |||| |||||| || ||||||||| Sbjct 72193 AACAGCAGCAAAAGCTACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTG 72143 >seq51 Length=398837 Score = 111 bits (122), Expect = 3e-19 Identities = 417/643 (65%), Gaps = 11/643 (2%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | ||| |||| ||||||||||| || ||||| | | | || |||| | || Sbjct 42301 CTGAGACTGGTCGATGAAGGCACCACGGTCCGCAGCCATCTGCACAACCTGTCG-CTGAG 42359 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 | ||||||||| |||||||||| ||||||| ||| | | | ||| | |||| Sbjct 42360 AAATCTCCCACACAGTCTTGTACAGAGCCTTGATATCGGCAGGGATGTTGGGGATGTTCT 42419 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACC-AAGTCCCACGA 293292 ||||||| || || | ||||| || |||||||||| ||||||| ||| |||| | Sbjct 42420 GGATAGAACCACCATCAGCAATGATACGGTTCTTCATACCATCGGACCAAAGACCCATG- 42478 Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 | | || || || ||| | | ||||||||| ||||||| ||||| || || Sbjct 42479 TCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACTTGGAACTCGCCAGCAAGGACTCGG 42538 Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412 || ||| ||||| || ||| ||| ||| ||| || |||||| | Sbjct 42539 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAG 42598 Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACA 293469 ||| || || |||||| ||||| |||| ||| | | ||| | |||||||| Sbjct 42599 GTACTAGCAGTGGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACA 42658 Query 293470 CGCGATTCGAGACCCGCCCAGTCCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATA 293528 | | |||| |||| ||| | | || || || | ||| ||| | || | | Sbjct 42659 TCCTCTCGGAGAGATTCCCACTCCCAAAGA-TCAGAGGGCTTGACATTCCACATATCAAA 42717 Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588 ||| | || |||| ||||||||| |||| ||||||| | ||| || | ||| | Sbjct 42718 CTGGAGAATGCCCTCAGAGGCAGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTT 42777 Query 293589 AGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647 | ||||| ||| ||| | || ||||| ||||| ||||||||| | || Sbjct 42778 GGCGAGCT-GCACAGAGGTAGTAAGGGCAGCGTGATAAATAGTCTCGAAGATTTGCTTGT 42836 Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707 | |||| ||||||| ||| ||||| ||||| || | ||| |||| | Sbjct 42837 TCAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGAGCAAGGAAGGCATCAGCAA 42896 Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCT 293750 |||| || ||||| | ||||| ||| || ||||| ||||||| Sbjct 42897 GACCTTGGACACCGAGACCAATGGGTCGGTGACGCATGTTGCT 42939 >seq169 Length=232921 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 54722 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 54781 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 54782 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 54841 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 54842 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 54900 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 54901 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 54946 Score = 87.8 bits (96), Expect = 4e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| ||||| || ||| ||||| |||| | | || Sbjct 56124 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGACTGTCCTTGCCGCTT 56183 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || || | |||||||| |||||||||||||||||||| ||||| Sbjct 56184 GCTCT-TGGCAGCGACCCCATCTCATCGTTCTTGACGAGCCTACCAACTATCTTGACCGT 56242 Query 280821 GA 280822 || Sbjct 56243 GA 56244 >seq181 Length=132117 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || |||||||| || |||||||||||||||||||| | | || || || || | Sbjct 61485 AGTTGGATCTCTGTCTGGAGGTTGGAAGATGAAGCTGGCTTTGGCCCGTGCTATGCTGCA 61544 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||| || |||||||| || ||||| || || || ||||| | ||| ||||| | || Sbjct 61545 GCGCGCTGATGTCCTTCTTCTTGACGAACCTACTAACCATCTTGACGTTGCCAACATCGC 61604 Query 279815 CTGGCTAGTGTCCTACCT 279832 ||||| | | |||||| Sbjct 61605 ATGGCTCGAGAACTACCT 61622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830465634521