Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq174 179 7e-40 seq46 170 4e-37 seq61 134 3e-26 >seq174 Length=222900 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || ||||| || || || ||||| || |||||| Sbjct 54283 CCACCACGAAGGCGAAGCACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAG 54342 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| |||||||| || | || || ||||| || ||| Sbjct 54343 AGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGA 54402 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| ||||||||||| | ||| || || Sbjct 54403 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGATGACTCGACC 54462 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 54463 TCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | |||||||| || || ||||| || |||||||| || ||||| Sbjct 53995 TCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 54054 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || || || | |||||| || || || || || | || ||||| || || Sbjct 54055 GAGGGTTCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGG 54114 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||| |||||||| |||||||| | ||||||| ||||||||||| | || || || Sbjct 54115 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGAC 54174 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || |||||||||||||||| Sbjct 54175 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 54212 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| |||||||| | || | || || |||||||| || || || || ||||| ||| Sbjct 54511 CCTCCACGAAGGCGAAGCACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGAG 54570 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | || || ||||| || || Sbjct 54571 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 54630 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| || |||||||| || | ||| || || Sbjct 54631 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTATCAGATGACTCAACC 54690 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || || | |||||||||||| |||||||| ||| Sbjct 54691 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 54741 >seq46 Length=272426 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || |||||||| || |||||||| || ||| Sbjct 233959 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 234018 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || || Sbjct 234019 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 234078 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 234079 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 234138 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || | |||||| || || |||||||||||||||||||| |||||||| |||| Sbjct 234139 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATGC 234190 >seq61 Length=421038 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 258729 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 258670 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || || || || || ||||| |||||||| || ||||| | |||||| ||| Sbjct 258669 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 258610 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 258609 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 258551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616858745320