Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq46 105 6e-18 seq174 95.1 1e-14 >seq46 Length=272426 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || || || |||||||| ||| Sbjct 233956 ATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 234015 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || || ||| || || || |||||||| |||| || ||||| |||||||| Sbjct 234016 CTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGG 234075 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| |||||||| || || Sbjct 234076 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCC 234135 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | ||| || || || || || || || |||||||||||| Sbjct 234136 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 234186 >seq174 Length=222900 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| || ||||||||||| ||| Sbjct 54280 ATACCACCACGAAGGCGAAGCACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCG 54339 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || ||||| || || ||| | || | ||||| ||||| || Sbjct 54340 GAGAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGG 54399 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | || | |||||||| || ||| Sbjct 54400 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGATGACTCG 54459 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || || || || || || |||||||| Sbjct 54460 ACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131937093372