Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq221 105 1e-17 seq169 84.2 5e-11 >seq221 Length=98460 Score = 105 bits (116), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 243500 AAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCC 243559 |||| ||||| || || ||| | || |||| ||| || || ||| | || || Sbjct 72372 AAATTATCACCGATGCCGTTACCATTGAGCAGGAGTTCCTTACTGAGGCTCTCCCTTGTG 72431 Query 243560 GGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 || | ||||||||||| | |||||| ||||||||||| ||||| || || || Sbjct 72432 CTCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTCGTCGCTGATCGTC 72491 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 | || |||| || || | ||||| |||||||| | | |||||||| | ||| |||| Sbjct 72492 TCCTCGTCGCTCTCGGCAACGAGAAGGTGTACAAGGCTACCAACCCCTTCGACTTCATGG 72551 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || ||| || ||| || || || ||||||||||| |||||||| Sbjct 72552 AGAACATCTCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 72597 >seq169 Length=232921 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| |||| || |||||||| || || || || || | || Sbjct 54895 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGACTTTCCGGAACC 54836 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || || |||||||| || | |||||||| ||| || | || | ||| || Sbjct 54835 GTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGGAGGTGAGTCTGGTTGAG 54776 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 |||||| || |||| || || ||||| || ||| | || ||||||||||| Sbjct 54775 AAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAAAGATCCTCACC 54722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873203157350