Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq174 109 6e-19
seq46 102 9e-17
>seq174
Length=222900
Score = 109 bits (120), Expect = 6e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||| | | || | ||| | ||| | |||| |||||| ||||||||||||||||
Sbjct 54510 ACCTCCACGAAGGCGAAGCACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGA 54569
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || |||| || |||||||| || ||||| || | |||||||||||| | ||
Sbjct 54570 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGG 54629
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| || |||||||||| ||| | || | || | | | | || || || || |
Sbjct 54630 GATGCCCTCCTTGTCC-TGAATCTTGGACTTCACATTGTCGATGGTATCAGATGACTCAA 54688
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| |||| |||||||| ||||| || | ||||| || ||||| |||||
Sbjct 54689 CCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 54737
Score = 102 bits (112), Expect = 9e-17
Identities = 135/182 (74%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | || || || |||| || |||||||||||||| ||
Sbjct 54031 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTACCAGCAAA 54090
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || ||||||||||| | || | || |||||||||| ||| | || | |||| ||
Sbjct 54091 GATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 54148
Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194
| | | | |||||| ||| || || |||| |||||||| ||||| || || |||||
Sbjct 54149 TTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 54208
Query 42195 AC 42196
||
Sbjct 54209 AC 54210
Score = 102 bits (112), Expect = 9e-17
Identities = 153/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||| | ||| | |||| ||||| ||||| ||||| || | || || || | || ||
Sbjct 54300 CACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTC 54359
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|| ||||| || ||||| || | |||||||||||| | || | || |||||||||| |
Sbjct 54360 GAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC-T 54418
Query 42119 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 42176
|| | || | |||| ||| | | | |||||| || || || |||| ||||||||
Sbjct 54419 GAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTC 54477
Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || || ||||| || ||||| |||||
Sbjct 54478 TTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509
>seq46
Length=272426
Score = 102 bits (112), Expect = 9e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | ||| |||||| || || ||||| || ||| || || | || ||
Sbjct 233977 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 234036
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|||||||||||||| || || |||||||||||||| | || | | |||||||||| |
Sbjct 234037 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 234096
Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
|| || |||| ||| | | | |||||| || ||||| || | ||||| || ||
Sbjct 234097 ATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 234155
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || ||||| || || || |||||
Sbjct 234156 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 234185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543209533933040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |