Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq46 122 9e-23 seq174 96.9 3e-15 seq221 87.8 2e-12 >seq46 Length=272426 Score = 122 bits (134), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || ||||| | | Sbjct 233992 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 234051 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 234052 AAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 234111 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 234112 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 234171 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 234172 ACGAAAATCTGCATG 234186 >seq174 Length=222900 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || ||||| | | Sbjct 54029 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTACCAGCA 54088 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| ||||| || || || ||||| ||| | || | || | Sbjct 54089 AAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTGAC 54147 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| |||||| ||||||| || | || || ||||| || || | Sbjct 54148 GTTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCT 54206 Query 138599 TTAC 138602 | || Sbjct 54207 TGAC 54210 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| | || || ||||||||||| || |||| Sbjct 54316 GATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCG 54375 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | ||||| ||||| || || || || || ||||| ||| | || | || | Sbjct 54376 AAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGAC 54434 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| ||||| ||||||| || | || || || || || || | Sbjct 54435 GTTG-TCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCT 54493 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 54494 TGACGAAGATCTGCAT 54509 >seq221 Length=98460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 52665 CTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG 52724 ||||| ||||||||| | | |||| ||||||||||||| || || |||||||| Sbjct 72434 CTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTCGTCGCTGATCGTCTC 72493 Query 52725 TTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAA 52783 | || ||||| || | | ||| | ||| ||| ||| || || || || ||| | Sbjct 72494 CTCGTCGCTCTCGG-CAACGAGAAGGTGTACAAGGCTACCAACCCCTTCGACTTCATGGA 72552 Query 52784 CAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||| || |||| |||||||||||||| ||||||||||| || Sbjct 72553 GAACATCTCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 72597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259416222320