Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq46 122 9e-23
seq174 96.9 3e-15
seq221 87.8 2e-12
>seq46
Length=272426
Score = 122 bits (134), Expect = 9e-23
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || ||||| | |
Sbjct 233992 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 234051
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| |||||||| || ||||| || ||||| ||| || || |
Sbjct 234052 AAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 234111
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||||||||| | || | ||| || || || || || ||
Sbjct 234112 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 234171
Query 138601 ACAAAAATCTGCATG 138615
|| ||||||||||||
Sbjct 234172 ACGAAAATCTGCATG 234186
>seq174
Length=222900
Score = 96.9 bits (106), Expect = 3e-15
Identities = 134/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || || ||||||||| || ||||| | |
Sbjct 54029 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTACCAGCA 54088
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || ||||| ||||| ||||| || || || ||||| ||| | || | || |
Sbjct 54089 AAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTGAC 54147
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||||| |||||| ||||||| || | || || ||||| || || |
Sbjct 54148 GTTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCT 54206
Query 138599 TTAC 138602
| ||
Sbjct 54207 TGAC 54210
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| ||||||||||||||| | || || ||||||||||| || ||||
Sbjct 54316 GATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCG 54375
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
| || | ||||| ||||| || || || || || ||||| ||| | || | || |
Sbjct 54376 AAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGAC 54434
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||||| ||||| ||||||| || | || || || || || || |
Sbjct 54435 GTTG-TCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCT 54493
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 54494 TGACGAAGATCTGCAT 54509
>seq221
Length=98460
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 52665 CTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG 52724
||||| ||||||||| | | |||| ||||||||||||| || || ||||||||
Sbjct 72434 CTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTCGTCGCTGATCGTCTC 72493
Query 52725 TTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAA 52783
| || ||||| || | | ||| | ||| ||| ||| || || || || ||| |
Sbjct 72494 CTCGTCGCTCTCGG-CAACGAGAAGGTGTACAAGGCTACCAACCCCTTCGACTTCATGGA 72552
Query 52784 CAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828
||||| || |||| |||||||||||||| ||||||||||| ||
Sbjct 72553 GAACATCTCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 72597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259416222320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |