Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq46 118 1e-21 seq61 114 1e-20 seq174 107 2e-18 >seq46 Length=272426 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| |||| | Sbjct 233959 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 234018 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||||||||| || || || Sbjct 234019 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 234078 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| || | |||||| | | ||| || Sbjct 234079 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAGACTCCAC 234137 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||| || || || || || || || |||||||||||| Sbjct 234138 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 234186 >seq61 Length=421038 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || ||| ||||||||||||||||||| || || ||||||||||| Sbjct 258697 ATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTT 258638 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| | |||||| |||| ||| | Sbjct 258637 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 258578 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 258577 GGTCTTGCCCGTCAGGGTCTTCACGAAA 258550 >seq174 Length=222900 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | || || || || ||||| ||||| ||| Sbjct 54283 CCACCACGAAGGCGAAGCACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAG 54342 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || || ||| | |||||||||||||| || || || Sbjct 54343 AGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGA 54402 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| |||||| | |||||| Sbjct 54403 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGATGACTCGAC 54461 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| || || || || || || |||||||| Sbjct 54462 CTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || ||||| || |||||||||||||| | || || || || Sbjct 54528 CACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGAGAGGGTTCGGCCGTCCTC 54587 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || ||| | |||||||||||||| || ||||| ||||||||||||||| Sbjct 54588 GAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 54647 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||| | | |||| ||| || | ||| || |||| ||| | || || Sbjct 54648 AATCTTGGACTTCACATTGTCGATGGTATCAGATGACTCAACCTCGAGGGTGATGGTCTT 54707 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||||| || || || || ||||||||| Sbjct 54708 GCCGGTCAAGGTCTTGACGAAGATCTGCATG 54738 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | ||||| || | || ||||| || || || ||||| Sbjct 53990 TACTG-TCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTA 54048 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| | || ||| || || ||||| || ||||| |||| | |||||||| || Sbjct 54049 GTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTC 54108 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| ||||||||||||||| || || ||||| |||| |||| |||||| | Sbjct 54109 AGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGACG 54167 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||||| |||| ||| | || ||||| || || || || || Sbjct 54168 ACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 54210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497941051440