Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq174 125 8e-24 seq61 120 3e-22 seq46 102 9e-17 >seq174 Length=222900 Score = 125 bits (138), Expect = 8e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | ||| ||||| || || ||||||||||| || || || | || || Sbjct 54300 CACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTC 54359 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||| |||||||||||||| ||||| ||||||||||| | || | || |||||||||| Sbjct 54360 GAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 54419 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| ||||| ||| | | | |||||| || || || || | |||||||| | Sbjct 54420 AATCTTGGACTTGA-CGTTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCT 54478 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || || || ||||| ||||| Sbjct 54479 TGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | ||| |||||| || |||||||| || || || || || |||| || Sbjct 54528 CACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGAGAGGGTTCGGCCGTCCTC 54587 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||||||| ||||| ||||||||||| | || | || |||||||||| Sbjct 54588 GAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 54647 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | | | | || || || || || || | |||||||| || Sbjct 54648 AATCTTGGACTTCACATTGTCGATGGTATCAGATGACTCAACCTCGAGGGTGATGGTCTT 54707 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 54708 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 54737 Score = 113 bits (124), Expect = 5e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || |||| ||||||||||| || || || Sbjct 54031 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTACCAGCAAA 54090 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| ||||| ||||| ||| Sbjct 54091 GATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 54149 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | |||||||| ||||| || || || || | Sbjct 54150 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGA 54209 Query 46581 C 46581 | Sbjct 54210 C 54210 >seq61 Length=421038 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || |||||||||||||||||||| | Sbjct 258731 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 258672 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| |||||||| || | || | || |||||||||| |||||| ||||| | Sbjct 258671 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 258612 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 258611 CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 258552 Query 46584 A 46584 | Sbjct 258551 A 258551 >seq46 Length=272426 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || ||||||||||| || || || Sbjct 233994 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 234053 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 234054 GATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 234112 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 234113 TGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 234172 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 234173 CGAAAATCTGCAT 234185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235001504120