Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq221 188 7e-43 seq174 131 2e-25 seq46 116 4e-21 seq61 102 8e-17 >seq221 Length=98460 Score = 188 bits (208), Expect = 7e-43 Identities = 549/828 (66%), Gaps = 23/828 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| || || || || || || ||||| || ||| | ||| || || |||||||| Sbjct 72591 TTCTCGAAGAAGTTGGTCTTGCCG-CCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 72533 Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 || | ||||| ||| | |||||| || ||||||| || | || || ||||| Sbjct 72532 GGTAGCCTTGTACACCTTCTCGTTGCCGAG-AG--CGACGAGGAGACGATCAGCGACGAA 72476 Query 132741 CTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTT 132799 ||||||||| ||| |||| | | | || | || |||||| |||| || || || | Sbjct 72475 CTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGA-GCACAAGGGAGAGCCT 72417 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | || || || ||||| |||| || || ||||||| |||||| || | Sbjct 72416 CAGTAAGGAACTCCTGCTCAATGGTAACGGCATCGGTGATAATTTCCTGAATCATCTGTT 72357 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| | ||| | | || | | | ||| |||||||| || | |||| Sbjct 72356 TGCTGGCACGTCCCTTGAGGTGAGAGTGAAGGAGGCAGGCAAAGTCAGTGTGAAGACCCT 72297 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 | || | || ||||| |||||| || ||| || |||||||||||||| || |||| Sbjct 72296 CATCACGAGAGATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTGA 72237 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| || || || ||||||| ||||| || || || ||||| | Sbjct 72236 GCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCAAAAGCTA 72177 Query 133040 CCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097 | || |||| | || | | ||||| | |||| ||||| || | ||||| || || Sbjct 72176 CAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGG--ATCCATCGGATGGCCCAATCCGC 72119 Query 133098 CTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA 133157 ||| | | || ||| || || || || | |||||| || | | | | | || | Sbjct 72118 CTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAG--GTATGTGCGCTGAGCA 72061 Query 133158 GGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATG 133215 || | | ||||||||| ||||| || || |||| ||||| | ||||||||| Sbjct 72060 GGGTCCTTGATGTAGGTGTCAATGAGCAGGGAGTATGTTTCGGAGTGGATGTTCTCCATC 72001 Query 133216 GCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGC 133275 ||| || ||||| || ||||| || |||||| | ||| || || ||||||| Sbjct 72000 ATGATCTGGAAGCCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAACGC 71941 Query 133276 TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG 133335 || || || || |||||||||||||| ||| ||| ||||| || || || | ||| | Sbjct 71940 TCAACGAGGTTCTCGTTGACGATGCCATCGGAGGCAGCGAAGAAAGCAAGAATGTGGGAG 71881 Query 133336 ATGAAATGGCGCTCGT-TGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAG 133391 ||||| | |||||| || | ||| || | ||||||| | |||||||| || Sbjct 71880 ATGAAGTATTGCTCGTCTGAAG-TCAGACGGTTGTTCCAGTCGTGAAGATCCTTGGAGAG 71822 Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || | |||||| | ||||| || || ||||| || || |||||||| Sbjct 71821 ATCGATCTCCTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGTACAT 71774 >seq174 Length=222900 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 54509 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 54450 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| ||||| |||||| | ||||| Sbjct 54449 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCA 54391 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| ||||| || || || || | || |||||| ||||||||| Sbjct 54390 GCAGCGATTGATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTCTCCGACTACAA 54331 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || |||||| | || || ||| | ||||| || Sbjct 54330 CATTCAGAAGGAATCCACACTCCATCTCGTGCTTCG 54295 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| ||||||||| |||| |||||| | |||||| | | Sbjct 54212 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCG 54153 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || || | ||||| ||||| || || | ||||| ||||| || Sbjct 54152 ACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTT 54094 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || || || ||||| || |||| || |||||| ||||||||||||||| ||| Sbjct 54093 ATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAG 54034 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || |||| || || ||||| || ||| Sbjct 54033 GAGTCGACTCTTCACTTGGTCCTCCGT 54007 >seq46 Length=272426 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 234185 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 234126 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| || ||| | ||||| Sbjct 234125 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 234067 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | |||||||| | ||||||||| Sbjct 234066 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 234007 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || ||||| || || Sbjct 234006 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCG 233971 >seq61 Length=421038 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| | | |||| | | Sbjct 258551 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 258610 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | || || ||||| | Sbjct 258611 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 258670 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 258671 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 258730 Query 38433 G 38433 | Sbjct 258731 G 258731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169792711040