Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq221 188 7e-43
seq174 131 2e-25
seq46 116 4e-21
seq61 102 8e-17
>seq221
Length=98460
Score = 188 bits (208), Expect = 7e-43
Identities = 549/828 (66%), Gaps = 23/828 (3%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683
||||| || || || || || || ||||| || ||| | ||| || || ||||||||
Sbjct 72591 TTCTCGAAGAAGTTGGTCTTGCCG-CCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 72533
Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740
|| | ||||| ||| | |||||| || ||||||| || | || || |||||
Sbjct 72532 GGTAGCCTTGTACACCTTCTCGTTGCCGAG-AG--CGACGAGGAGACGATCAGCGACGAA 72476
Query 132741 CTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTT 132799
||||||||| ||| |||| | | | || | || |||||| |||| || || || |
Sbjct 72475 CTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGA-GCACAAGGGAGAGCCT 72417
Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859
| || || || ||||| |||| || || ||||||| |||||| || |
Sbjct 72416 CAGTAAGGAACTCCTGCTCAATGGTAACGGCATCGGTGATAATTTCCTGAATCATCTGTT 72357
Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919
||| | ||| | | || | | | ||| |||||||| || | ||||
Sbjct 72356 TGCTGGCACGTCCCTTGAGGTGAGAGTGAAGGAGGCAGGCAAAGTCAGTGTGAAGACCCT 72297
Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979
| || | || ||||| |||||| || ||| || |||||||||||||| || ||||
Sbjct 72296 CATCACGAGAGATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTGA 72237
Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039
|||| || |||| || || || ||||||| ||||| || || || ||||| |
Sbjct 72236 GCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCAAAAGCTA 72177
Query 133040 CCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097
| || |||| | || | | ||||| | |||| ||||| || | ||||| || ||
Sbjct 72176 CAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGG--ATCCATCGGATGGCCCAATCCGC 72119
Query 133098 CTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA 133157
||| | | || ||| || || || || | |||||| || | | | | | || |
Sbjct 72118 CTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAG--GTATGTGCGCTGAGCA 72061
Query 133158 GGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATG 133215
|| | | ||||||||| ||||| || || |||| ||||| | |||||||||
Sbjct 72060 GGGTCCTTGATGTAGGTGTCAATGAGCAGGGAGTATGTTTCGGAGTGGATGTTCTCCATC 72001
Query 133216 GCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGC 133275
||| || ||||| || ||||| || |||||| | ||| || || |||||||
Sbjct 72000 ATGATCTGGAAGCCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAACGC 71941
Query 133276 TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG 133335
|| || || || |||||||||||||| ||| ||| ||||| || || || | ||| |
Sbjct 71940 TCAACGAGGTTCTCGTTGACGATGCCATCGGAGGCAGCGAAGAAAGCAAGAATGTGGGAG 71881
Query 133336 ATGAAATGGCGCTCGT-TGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAG 133391
||||| | |||||| || | ||| || | ||||||| | |||||||| ||
Sbjct 71880 ATGAAGTATTGCTCGTCTGAAG-TCAGACGGTTGTTCCAGTCGTGAAGATCCTTGGAGAG 71822
Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| | |||||| | ||||| || || ||||| || || ||||||||
Sbjct 71821 ATCGATCTCCTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGTACAT 71774
>seq174
Length=222900
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | ||
Sbjct 54509 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 54450
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | ||||| ||||| |||||| | |||||
Sbjct 54449 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCA 54391
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | |||| ||| ||||| || || || || | || |||||| |||||||||
Sbjct 54390 GCAGCGATTGATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTCTCCGACTACAA 54331
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| || |||||| | || || ||| | ||||| ||
Sbjct 54330 CATTCAGAAGGAATCCACACTCCATCTCGTGCTTCG 54295
Score = 118 bits (130), Expect = 1e-21
Identities = 152/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| ||||||||| |||| |||||| | |||||| | |
Sbjct 54212 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCG 54153
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| | || || || | ||||| ||||| || || | ||||| ||||| ||
Sbjct 54152 ACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTT 54094
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | || || || ||||| || |||| || |||||| ||||||||||||||| |||
Sbjct 54093 ATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAG 54034
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| |||| || || ||||| || |||
Sbjct 54033 GAGTCGACTCTTCACTTGGTCCTCCGT 54007
>seq46
Length=272426
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || || |||||| | || || ||| | ||
Sbjct 234185 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 234126
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| || ||| | |||||
Sbjct 234125 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 234067
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || ||||| || || | |||||||| | |||||||||
Sbjct 234066 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 234007
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || ||||| || ||
Sbjct 234006 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCG 233971
>seq61
Length=421038
Score = 102 bits (112), Expect = 8e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| | | |||| | |
Sbjct 258551 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 258610
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | || || ||||| |
Sbjct 258611 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 258670
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | || |||||| ||||||||||||||| |||
Sbjct 258671 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 258730
Query 38433 G 38433
|
Sbjct 258731 G 258731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169792711040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |