Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq46 152 1e-31 seq174 138 3e-27 seq61 116 8e-21 >seq46 Length=272426 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| ||| || || | ||||| |||||||| Sbjct 233982 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTG 234041 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||||||||| || ||||| || || || || || ||||| || || || Sbjct 234042 CTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 234101 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| ||||||||||| ||| ||||| |||||||| | |||||| || || Sbjct 234102 GGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGT 234161 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 234162 GAGGGTCTTGACGAAAATCTGCAT 234185 >seq174 Length=222900 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| || || || ||||| |||| || |||| || || |||||||| Sbjct 54019 GTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTG 54078 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||| || || ||||| ||||| ||||| || ||||| ||||| || Sbjct 54079 CTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTT 54138 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| || || || || ||||| | ||||| || || Sbjct 54139 GGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 54198 Query 195117 CAAAGTTTTTACGA 195130 | || || |||| Sbjct 54199 GAGGGTCTTGACGA 54212 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || |||||||||||||| | || |||| || || ||| Sbjct 54529 ACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGAGAGGGTTCGGCCGTCCTCG 54588 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || | ||| || ||||| ||||| ||||| || ||||| ||| Sbjct 54589 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 54648 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||| || || || || || ||||| | ||||| Sbjct 54649 ATCTTGGACTTCACATTGTCGATGGTATCAGATGACTCAACCTCGAGGGTGATGGTCTTG 54708 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 54709 CCGGTCAAGGTCTTGACGAAGATCTGCAT 54737 >seq61 Length=421038 Score = 116 bits (128), Expect = 8e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || |||| ||||| ||||||||||| || |||||||| Sbjct 258729 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 258670 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || || || || || ||||| || ||||| || || || |||||| || || Sbjct 258669 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 258610 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 258609 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 258551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474762472927