Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq174 111 1e-19 seq46 93.3 3e-14 seq61 86.0 4e-12 >seq174 Length=222900 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 34784 TGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCC 34843 |||| ||| ||||||||||| ||||| || ||| |||| |||| || || || || || Sbjct 54312 TGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGTTGCTTGCC 54371 Query 34844 GGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTT 34903 ||| || || | ||| |||||||| | || | ||||||||||| |||||| || Sbjct 54372 GGCGAAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 54431 Query 34904 GACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGT 34963 |||| | || | || | ||| || |||| ||| ||||| || || ||||| || Sbjct 54432 GACGTTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGT 54491 Query 34964 CTTCACAAAGATCTGCATA 34982 ||| || |||||||||||| Sbjct 54492 CTTGACGAAGATCTGCATA 54510 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||| || ||| |||| | || || Sbjct 54014 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCG 54073 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| | Sbjct 54074 AGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 54133 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || |||| ||| ||||| || Sbjct 54134 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 54193 Query 34953 CCCGTGAGAGTCTTCAC 34969 || ||||| ||||| || Sbjct 54194 CCAGTGAGGGTCTTGAC 54210 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || || || || ||| |||| | || || ||||| || ||||| || Sbjct 54547 TCCTTCTGAATATTGTAATCAGAGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 54606 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| | || | ||||||||||| |||||| || || || Sbjct 54607 ATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCAC--AT 54664 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| | |||||| |||| ||| ||||| || || || | ||||| Sbjct 54665 --TGTCGATGGTATCAGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTT 54722 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 54723 GACGAAGATCTGCAT 54737 >seq46 Length=272426 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| ||| | || |||| || Sbjct 233977 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 234036 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || ||||| |||||||| | || | ||||||||||| Sbjct 234037 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 234096 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 234097 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 234156 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| || || |||||||| Sbjct 234157 CCCGTGAGGGTCTTGACGAAAATCTGCAT 234185 >seq61 Length=421038 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| |||| |||| || ||||| || ||||| || || Sbjct 258729 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 258670 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||| ||||| || | || | ||||||||||| ||||| ||||| || | Sbjct 258669 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--T 258614 Query 34914 ATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| | ||| | ||| || |||| ||| ||||| || ||||| || |||||||| Sbjct 258613 GTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 258554 Query 34970 AAA 34972 || Sbjct 258553 GAA 258551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631696936968