Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq174 105 5e-18 seq126 84.2 2e-11 >seq174 Length=222900 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| ||| || ||||||||||||||||| || |||| Sbjct 54520 AGGCGAAGCACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGAGAGGGTTCGG 54579 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || |||| |||||| || || | || | ||||||| Sbjct 54580 CCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCC 54639 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||| ||||| | || Sbjct 54640 TTGTCCTGAATCTTGGACTTCACATTGTCGATGGTATCAGATGACTCAACCTCGAGGGTG 54699 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || |||||||| Sbjct 54700 ATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 54737 >seq126 Length=335456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 9093 TTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCAC 9152 ||| ||||| | ||| |||| || | |||||| | |||| || ||||| || | Sbjct 42465 TTGGGCAATGCGGTCGCCCTCCTTAATCTGAAAGTCGGAGTCGTTGTGGTTGAAGAGAAG 42524 Query 9153 CACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTG 9212 || ||| | || | |||||| ||||||| ||||||||||| |||||||||||| Sbjct 42525 GACCTTCACTTGGCCACGGTAATCGGCATCGATGACACCAGCACCTGTGTCGATGAAGTG 42584 Query 9213 CTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACC 9248 |||| || || || || ||||| ||||| ||||| Sbjct 42585 CTTGGAGGCGAGACCTGATCGGGGAGCGATACGACC 42620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935366872363