Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq65 136 5e-26 seq51 122 1e-21 seq215 105 8e-17 seq221 100 3e-15 >seq65 Length=269349 Score = 136 bits (150), Expect = 5e-26 Identities = 93/105 (89%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||| |||||||| || ||| |||| |||||| | || |||||||||| Sbjct 47128 CCAACTACCTCGACATTAAGCCTCTTCTGGATGTTGGATGCAAGACCGTCGCCAACATGA 47187 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||| | ||||| ||||||||||||||||| ||||||| Sbjct 47188 TCAAGGGCAAGGCACCCGAAGAGATCCGCAAGACCTTCAACATCA 47232 >seq51 Length=398837 Score = 122 bits (134), Expect = 1e-21 Identities = 207/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| || || || |||||||| |||| |||||||| Sbjct 43558 CTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 43617 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || || | ||| | ||| | ||| || | ||| || ||||| Sbjct 43618 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCATTCAAGCC 43677 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| || |||||||| || || Sbjct 43678 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGAGTATCGTAGATACCATC 43737 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || || || ||||| || || ||| || || | || || Sbjct 43738 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGATAGTTGAGGCTGTGGGGTACC 43797 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| | ||||| |||| ||||| |||| | |||||| || ||| || Sbjct 43798 GGCGTTGAATAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 43857 Score = 86.0 bits (94), Expect = 8e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| ||||| ||| |||| || ||| || ||||| || || ||| ||||||||| Sbjct 43405 CATGAAGAGATCAGGGATCCAAAGAGCGAGGAACAGGTCACGAGCGCGGACCTCCTCCTT 43464 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||||||||| ||| || || | |||| | |||||||||||| ||||| ||||| Sbjct 43465 ACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTA 43524 Query 1628568 GCAGGCAAAGGCGCC 1628582 ||| ||||| || Sbjct 43525 AATGGCGAAGGCACC 43539 >seq215 Length=105385 Score = 105 bits (116), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| |||||||| || || || || || || | ||| | |||||||||||| Sbjct 29115 GACAGCACTGGCGGCACCGTCACCTGTGTCATCCGTAATGCGCCCTCTGGCCTCGGCGAG 29174 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| | Sbjct 29175 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 29234 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| |||||| | ||| ||| || Sbjct 29235 AAGGCCTTCGAGCTAGGCTCCGGCTT 29260 >seq221 Length=98460 Score = 100 bits (110), Expect = 3e-15 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| |||||||||||||| | || ||||| Sbjct 72615 GCCTTCTGGTAGTCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATG 72556 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| ||||| | || Sbjct 72555 TTCTCCATGAAGTCGAAGGGGTTGGTAGCCTTGTACACCTTCTCGTTGCCGAGAGCGACG 72496 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || || || ||||| |||||||||||||| ||||||| || ||||||||||| Sbjct 72495 AGGAGACGATCAGCGACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGA 72438 Score = 87.8 bits (96), Expect = 2e-11 Identities = 198/291 (68%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| |||| || || ||||||||||||||||| Sbjct 72301 ACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCCGCGCTT 72242 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| |||||| | || || || | | ||| ||||| ||||| || || ||| Sbjct 72241 CTTGAGCCAGAAGATG--GAAGCAAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCA 72184 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353 || | | || |||| |||||| | ||| | |||| | |||||| || Sbjct 72183 AAAGCTACAAGACGCTGAGCAAAG--GAAGAG----TTCTTGTCCTGGATCCATCGGATG 72130 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412 ||||| || ||||| || | | | || | ||||| | |||| ||||||| || Sbjct 72129 GCCCAATCCGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAGGTATGTG 72070 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | || |||||||||| |||||||| || || || || || || || Sbjct 72069 C-GCTGAGCAGGGTCCTTGATGTAGGTGTCAATGAGCAGGGAGTATGTTTC 72020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107099726887477