Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq65 136 5e-26
seq51 122 1e-21
seq215 105 8e-17
seq221 100 3e-15
>seq65
Length=269349
Score = 136 bits (150), Expect = 5e-26
Identities = 93/105 (89%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||||||||| |||||||| || ||| |||| |||||| | || ||||||||||
Sbjct 47128 CCAACTACCTCGACATTAAGCCTCTTCTGGATGTTGGATGCAAGACCGTCGCCAACATGA 47187
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||| | ||||| ||||||||||||||||| |||||||
Sbjct 47188 TCAAGGGCAAGGCACCCGAAGAGATCCGCAAGACCTTCAACATCA 47232
>seq51
Length=398837
Score = 122 bits (134), Expect = 1e-21
Identities = 207/300 (69%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| || || |||| ||| || || || |||||||| |||| ||||||||
Sbjct 43558 CTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 43617
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| ||||| || || | ||| | ||| | ||| || | ||| || |||||
Sbjct 43618 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCATTCAAGCC 43677
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| |||||| || | || || ||||| || |||||||| || ||
Sbjct 43678 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGAGTATCGTAGATACCATC 43737
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| ||||||| || || || ||||| || || ||| || || | || ||
Sbjct 43738 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGATAGTTGAGGCTGTGGGGTACC 43797
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| | ||||| |||| ||||| |||| | |||||| || ||| ||
Sbjct 43798 GGCGTTGAATAAAGTGGGGCTCGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 43857
Score = 86.0 bits (94), Expect = 8e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507
||| ||||| ||| |||| || ||| || ||||| || || ||| |||||||||
Sbjct 43405 CATGAAGAGATCAGGGATCCAAAGAGCGAGGAACAGGTCACGAGCGCGGACCTCCTCCTT 43464
Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567
|||||||||||| ||| || || | |||| | |||||||||||| ||||| |||||
Sbjct 43465 ACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTA 43524
Query 1628568 GCAGGCAAAGGCGCC 1628582
||| ||||| ||
Sbjct 43525 AATGGCGAAGGCACC 43539
>seq215
Length=105385
Score = 105 bits (116), Expect = 8e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| |||||||| || || || || || || | ||| | ||||||||||||
Sbjct 29115 GACAGCACTGGCGGCACCGTCACCTGTGTCATCCGTAATGCGCCCTCTGGCCTCGGCGAG 29174
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| |
Sbjct 29175 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 29234
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192
|||| |||||| | ||| ||| ||
Sbjct 29235 AAGGCCTTCGAGCTAGGCTCCGGCTT 29260
>seq221
Length=98460
Score = 100 bits (110), Expect = 3e-15
Identities = 129/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| |||||| |||||||||||||| | || |||||
Sbjct 72615 GCCTTCTGGTAGTCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATG 72556
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| ||||| | ||
Sbjct 72555 TTCTCCATGAAGTCGAAGGGGTTGGTAGCCTTGTACACCTTCTCGTTGCCGAGAGCGACG 72496
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
|| || || || ||||| |||||||||||||| ||||||| || |||||||||||
Sbjct 72495 AGGAGACGATCAGCGACGAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGA 72438
Score = 87.8 bits (96), Expect = 2e-11
Identities = 198/291 (68%), Gaps = 15/291 (5%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || ||| ||| | |||||| |||| || || |||||||||||||||||
Sbjct 72301 ACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCCGCGCTT 72242
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACGGCGGCA 869296
||||||||| |||||| | || || || | | ||| ||||| ||||| || || |||
Sbjct 72241 CTTGAGCCAGAAGATG--GAAGCAAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCA 72184
Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353
|| | | || |||| |||||| | ||| | |||| | |||||| ||
Sbjct 72183 AAAGCTACAAGACGCTGAGCAAAG--GAAGAG----TTCTTGTCCTGGATCCATCGGATG 72130
Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412
||||| || ||||| || | | | || | ||||| | |||| ||||||| ||
Sbjct 72129 GCCCAATCCGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAGGTATGTG 72070
Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| | || |||||||||| |||||||| || || || || || || ||
Sbjct 72069 C-GCTGAGCAGGGTCCTTGATGTAGGTGTCAATGAGCAGGGAGTATGTTTC 72020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107099726887477
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |