Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq51 161 9e-35 seq174 96.9 3e-15 >seq51 Length=398837 Score = 161 bits (178), Expect = 9e-35 Identities = 473/718 (66%), Gaps = 23/718 (3%) Strand=Plus/Plus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||||||||||||||| || | || || ||||||||| ||||| |||| | | || Sbjct 43297 CTCGTACTTTTCGTACAGAGCCTCAAACTCATCACCGTAGCAGTCAGCAAGACCAGGGCA 43356 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || || ||||| || | |||| |||||||| || ||| ||| ||||||| ||||| Sbjct 43357 CTCGTTGGGGCACATAAGAGTCCATTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATC 43416 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 || ||||| | ||||| | || || || || || ||| ||| ||| Sbjct 43417 AGGGATCCAAAGAGCGAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTT--C 43474 Query 139482 TTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 |||| | | |||||| || || ||||| ||||||||||| || || || ||||| | Sbjct 43475 TTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAAATGGCGAAG 43534 Query 139540 GCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 || || || ||| ||||| || ||||||| || ||| || ||||| || ||| Sbjct 43535 GCACCGGGTCGCTTGTTACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGC 43594 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCG 139652 | ||| || | | |||| | | || || ||||| || | | | | | | || Sbjct 43595 AGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT---- 43650 Query 139653 AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712 || |||| || |||| | ||| || || || | | ||||| || | | || Sbjct 43651 GGCACGGATTCGGTGGGCATTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACA 43710 Query 139713 A-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 | || | | || ||||| ||||| |||||||| |||| ||| || || |||| Sbjct 43711 AGTCTTG-AGAGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 43769 Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831 |||| || ||||| || || || ||||| || | ||| || ||||| || |||| Sbjct 43770 ATGATGATAGTTGAGGCTGTGGGGTACCGGCGTTGAATAAAGTGGGGCTCGCATGAGTGA 43829 Query 139832 A-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 | | ||| || ||||| | | ||| ||||| | | | | | |||||| || | Sbjct 43830 AGAACTTGCTT-GACATGAGGTTGTATGTTTCCAAGACACGCTCAATATTGTCACCCCAG 43888 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 |||||||||| ||||||||| | |||||| || || ||||| | ||| || || Sbjct 43889 ATACCGACAGCGACTCGCATGATCATATGCTGCGGGCGCTCGGCAATTTTGCCGTCAATC 43948 Query 139951 tttttCAGATAACCGTTCT--CTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | | ||||| | |||| |||||| || | ||||| || | ||||| || || Sbjct 43949 TGTAGAAGATAGC--TTCTAGACAGGGTCCTGAAACCAAAATAATTGTAGTTAAAGTC 44004 >seq174 Length=222900 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | || Sbjct 54509 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 54450 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 54449 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 54390 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || ||||| || || || |||||| ||| | | || || || ||| Sbjct 54389 CAGCGATTGATTTTCGCCGGCAAGCAACTCGAGGATGGCCGAACCCTCTCCGACTACAAC 54330 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 ||||| |||||||| ||||| || Sbjct 54329 ATTCAGAAGGAATCCACACTCCA 54307 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || ||||| || || | | Sbjct 54737 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCATCT 54678 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || ||||| || || Sbjct 54677 GATACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 54618 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || ||||| || ||||| ||||| ||| | | || ||||| || Sbjct 54617 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCTCTGATTACAAT 54558 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || ||||| || | ||| | || | || ||||| Sbjct 54557 ATTCAGAAGGAGTCCACACTCCATCTCGTGCTTCGCCTTCGTGGAGG 54511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894894990680