Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq126 113 3e-19 >seq126 Length=335456 Score = 113 bits (124), Expect = 3e-19 Identities = 656/1041 (63%), Gaps = 17/1041 (2%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| || ||||| ||||| || || || || | ||||||| Sbjct 286331 ATACCGTTGGCATCAAGATCGAAAGTGACCTCAATCTGGGGAACACCACGGGGAGCAGGG 286272 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | |||| | || || || || ||| | || ||| Sbjct 286271 GGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTGGTGCGCTGACGCTCA 286212 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | |||||| || ||| || || || || | || | || || Sbjct 286211 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCA 286152 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || ||||| | |||| |||||||| ||||||||||| Sbjct 286151 GACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATAAGCTTGGTCATCATACCACCAGCG 286092 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| ||||| | |||||| | |||| || | || | | || Sbjct 286091 GTCTCAATACCGAGAGAGAGAGGGGCGACATCCAGAAGGAGGATCTCGTTGGTGGCCTTG 286032 Query 281739 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | || | | |||| ||||| || || || | ||| ||||| || |||||||| ||| Sbjct 286031 CTGGAGGTGTCACCAGAGAGAATGGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 285972 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 281857 || || || | | | || | | || || ||||| | | | | || | ||| Sbjct 285971 TCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAGTCGGTGATGAGCT-TCTG 285913 Query 281858 -ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 || || ||||| | ||||| || || | || || || || || | || || || Sbjct 285912 GACACGGGGGATACGGGTAGATCCACCGACGAGGACGATCTCGTGGACAAGGGACTTGTC 285853 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 | || | || | || || || || | | | | || || | || Sbjct 285852 GATCTTGGCGTCGGTAAGGACACGGTCGACAGGCTGGATAGTGGATCGGAAGAGATCCTG 285793 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 || || || ||||| ||| | || || || | || || ||||| || ||||| Sbjct 285792 GCAGAGCTCCTCGAAACGAGCACGGGT--GATGGATGTGTAGAAGTCAATACCCTCGAAG 285735 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | ||| || | ||||| | || |||| |||||||| || | || || ||||||||| Sbjct 285734 AGAGAGTCGATCTCAATGGAGGTCTGAGCGGAAGAAGAGAGAGTTCGCTTGGCACGTTCA 285675 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA--TTGATTCAAA--TCTGTTTTATA 282150 || || || | || | ||| | || | || ||| | | || || | |||| Sbjct 285674 CAAGCGGTTCGAAGACGTCGGAGAGCA----CGGACGTTGGTGCTAAGATCCTTCTTATG 285619 Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 ||||| |||||| || | || | | || ||||| ||||| ||||||||||| || Sbjct 285618 TTTTCGCTTGAACTCGTTGACGAAGTGGTTAACGAGACGGTTATCGAAATCTTCACCACC 285559 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 ||| | ||| | || | |||| | || | ||| | || || |||| | | || Sbjct 285558 CAAGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCCTCCTCAATGGTGAGGAG 285499 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 || ||||| ||| |||||||| | ||| || || || || || || || Sbjct 285498 AGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACCCTCAAC 285439 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 || || || ||||| || |||| || ||||| || || || || || |||| | ||| Sbjct 285438 CTTCTTGTCGAGACCGTAAGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCGGAGAAC 285379 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 || ||||| || || || ||||| || || || || | || || || || || || Sbjct 285378 GTTGAGACCGGCGATGAGACCGGCATCCTTGGTAGCCTGACGCTGAGAGTCATTGAAGTA 285319 Query 282451 TGCAGGAACAGTAATAACGGC 282471 ||||| || || | |||||| Sbjct 285318 GGCAGGGACGGTGACAACGGC 285298 Score = 89.7 bits (98), Expect = 4e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| | |||| || |||||||| |||||||| ||| | ||||||||| Sbjct 10237 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTTGATTTCTCTGCACGT 10178 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || ||||| |||| | || || | || | || || ||||| |||| | ||| Sbjct 10177 ACCGTCATTACCGGTGATGCCAACCTTTCCCTTCACGAGGTCGGTGTGCCTCGAAGTATC 10118 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 || | || ||||||| | ||| | ||| || Sbjct 10117 GCCAGAACCCTTACTTATCCCGAGACTGTTAC 10086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740606784932706