Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq46 134 1e-26
seq174 131 2e-25
seq61 104 2e-17
>seq46
Length=272426
Score = 134 bits (148), Expect = 1e-26
Identities = 156/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||| ||||| || ||||| |||| || ||| | | | ||||||||
Sbjct 233980 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 234038
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||| || || | || || ||||||||||| || ||||| || |||||||| |||
Sbjct 234039 CTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGAT 234098
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | |||| ||||||| | |||||| || | ||||| || || ||
Sbjct 234099 CTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 234158
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| || || || |||||||||||||||
Sbjct 234159 CGTGAGGGTCTTGACGAAAATCTGCATG 234186
>seq174
Length=222900
Score = 131 bits (144), Expect = 2e-25
Identities = 150/200 (75%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521
|||||||| ||||| ||||||||||| | || || || ||||||||||||||||
Sbjct 54541 GTGGACTCCTTCTGAATATTGTAATCAGAGAGGGTTCGGCCG--TCCTCGAGCTGCTTGC 54598
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| | ||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 54599 CGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACT 54658
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | || || | | ||| || |||| ||||| ||| |||||||||| |
Sbjct 54659 TCACATTGTCGATGGTATCAGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGG 54718
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 54719 TCTTGACGAAGATCTGCATG 54738
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
||||| || ||||| || ||||| ||| | || | | | |||||||| ||||||||
Sbjct 54313 GTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCGAGTTGCTTGCC 54371
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| | ||||||||||| || || ||||| |||||||| ||||| |||
Sbjct 54372 GGCGAAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 54431
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | ||| || |||| ||||| ||| ||||| || || ||
Sbjct 54432 GACGTTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGT 54491
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 54492 CTTGACGAAGATCTGCAT 54509
Score = 107 bits (118), Expect = 2e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| | || ||| ||||||||||||||| ||
Sbjct 54026 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACC-GTCCTCGAGCTGCTTACC 54084
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || ||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct 54085 AGCAAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTT 54144
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | ||| || |||| ||||| ||| ||||| || || ||
Sbjct 54145 GACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 54204
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 54205 CTTGACGA 54212
>seq61
Length=421038
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| ||| | || | |||||||| || || |||||||| ||||||
Sbjct 258696 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTG 258637
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | ||||| | | ||| || |||| ||||| |
Sbjct 258636 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 258577
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| ||||| ||||| || || ||||||
Sbjct 258576 GTCTTGCCCGTCAGGGTCTTCACGAAA 258550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483417893432440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |