Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq46 134 1e-26 seq174 131 2e-25 seq61 104 2e-17 >seq46 Length=272426 Score = 134 bits (148), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| |||| || ||| | | | |||||||| Sbjct 233980 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 234038 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || ||||||||||| || ||||| || |||||||| ||| Sbjct 234039 CTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGAT 234098 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||||| | |||||| || | ||||| || || || Sbjct 234099 CTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 234158 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||||||||||||| Sbjct 234159 CGTGAGGGTCTTGACGAAAATCTGCATG 234186 >seq174 Length=222900 Score = 131 bits (144), Expect = 2e-25 Identities = 150/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| ||||||||||| | || || || |||||||||||||||| Sbjct 54541 GTGGACTCCTTCTGAATATTGTAATCAGAGAGGGTTCGGCCG--TCCTCGAGCTGCTTGC 54598 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| ||||||||||| |||||||| ||||| || Sbjct 54599 CGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACT 54658 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || | | ||| || |||| ||||| ||| |||||||||| | Sbjct 54659 TCACATTGTCGATGGTATCAGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGG 54718 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 54719 TCTTGACGAAGATCTGCATG 54738 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| ||| | || | | | |||||||| |||||||| Sbjct 54313 GTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCGAGTTGCTTGCC 54371 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||| || || ||||| |||||||| ||||| ||| Sbjct 54372 GGCGAAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 54431 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | ||| || |||| ||||| ||| ||||| || || || Sbjct 54432 GACGTTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGT 54491 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 54492 CTTGACGAAGATCTGCAT 54509 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | || ||| ||||||||||||||| || Sbjct 54026 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACC-GTCCTCGAGCTGCTTACC 54084 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| ||||||||||| |||||||| ||||| ||| Sbjct 54085 AGCAAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTT 54144 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | ||| || |||| ||||| ||| ||||| || || || Sbjct 54145 GACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 54204 Query 133643 TTTTACGA 133650 || |||| Sbjct 54205 CTTGACGA 54212 >seq61 Length=421038 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | |||||||| || || |||||||| |||||| Sbjct 258696 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTG 258637 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | | ||| || |||| ||||| | Sbjct 258636 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 258577 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 258576 GTCTTGCCCGTCAGGGTCTTCACGAAA 258550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417893432440