Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq221 188 1e-41 seq51 93.3 6e-13 >seq221 Length=98460 Score = 188 bits (208), Expect = 1e-41 Identities = 387/559 (69%), Gaps = 30/559 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| |||| | Sbjct 71764 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCTTCCTTCTGGACAGCTGAGGAGATCGATC 71822 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| || |||| ||||||| | ||| Sbjct 71823 TCTCCAAGGATCTTCACG----ACTGGAACAACCGTCTGACTTCAGACGAGCAATACTTC 71878 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | || || ||| ||||| ||| |||||||||||| ||||||||| | Sbjct 71879 ATCTCCCACATTCTTGC-TTTCTTCGCTGCCTCCGATGGCATCGTCAACGAGAACCTCGT 71937 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | || || | |||||||| | || ||||| || | || || || |||||||| Sbjct 71938 TGAGCGTTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGCTTCCAGAT 71997 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| ||||| ||||| || || || ||||||||| ||||||| Sbjct 71998 CATGATGGAGAACATCCACTCCGAAACATACTCCCTGCTCATTGACACCTACATCAAGGA 72057 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 ||| | || | || ||||||| |||| | ||||| | || | | | || | Sbjct 72058 CCCTGCTCAG-CGCACATACCTCTTCAACGCCGTTGACACCATTCCTTGCATCCGAAAGA 72116 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183 |||| || ||||| || |||||| ||||| | ||| | |||||| |||| Sbjct 72117 AGGCGGATTGGGCCATCCGATGGATCCAGGACAAGAA----CTCTTC-CTTTGCTCAGCG 72171 Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCGCCATC 1456240 || || | ||||| || || ||||| ||||| ||| | | || || || ||||| Sbjct 72172 TCTTGTAGCTTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTTGCT--TCCATC 72229 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300 || |||||||||||||||||||||||||| |||| | ||||| |||||| | ||| Sbjct 72230 TTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTC-TGAGCTTTTCCAACGAGCTCATCTC 72288 Query 1456301 TCGCGACGA-AGTTTTCAC 1456318 ||| || || || ||||| Sbjct 72289 TCGTGATGAGGGTCTTCAC 72307 >seq51 Length=398837 Score = 93.3 bits (102), Expect = 6e-13 Identities = 202/294 (69%), Gaps = 10/294 (3%) Strand=Plus/Minus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951 |||||| |||| ||| ||||| ||| |||| ||||| | || || ||||| || || Sbjct 43846 CATGTCA-AGCAAGTTCTTCAC-TCATGCGAGCCCCACTTTATTCAACGCCGGTACCCCA 43789 Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011 | || || || || ||||| || | || ||||||| || || || || ||| Sbjct 43788 CAGCCTCAACTATCATCATGCTTCCTTGTTGATATGAAGGAGGACAGCATTGATGGTATC 43729 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTT---T 260068 || || || |||||| || || | || |||||| ||| || || || || || | Sbjct 43728 TACGATACTCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCTTGAAT 43669 Query 260069 GCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAAC 260128 ||| ||| || | || ||| | ||| | ||| | || || ||||| || |||||| Sbjct 43668 GCC-CACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTACCAATGGTACTTCCAAC 43612 Query 260129 GGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || | || |||||||| || || || ||| |||| || || |||||||||||| Sbjct 43611 GGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCAG 43558 Score = 91.5 bits (100), Expect = 2e-12 Identities = 173/253 (68%), Gaps = 14/253 (6%) Strand=Plus/Minus Query 263171 CCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC----CAACCGGGTGACCATT 263226 ||||| |||||||||| | |||||| ||||||||| | | | || || || || Sbjct 42398 CCGATATCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTGTGCAG- 42340 Query 263227 GATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC 263286 ||||| || ||||| | ||| |||||||| ||||| |||||| | || | Sbjct 42339 ---ATGGCTGCGGACCGTGGTGCCTTCATCGACCAGTCTCAGTCTCTCAACATTCACATG 42283 Query 263287 GCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGC 263343 ||||| || || | ||| || || |||||| | || ||| | ||| Sbjct 42282 AAGGACCCTACAATGGGCAAGATCACCAGC---ATGCACTTCGCTGGCTGGAAGCTCGGT 42226 Query 263344 CTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACC 263403 |||||||| ||||||||||| || || || | | | |||||| | |||| || |||||| Sbjct 42225 CTCAAGACCGGCATGTACTACCTCCGTACACAGGCTGCTGCCGCCCCCATCCAGTTCACC 42166 Query 263404 GTCGATCAGGCGA 263416 |||||||||| || Sbjct 42165 GTCGATCAGGAGA 42153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177764806665922