Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq221 188 1e-41
seq51 93.3 6e-13
>seq221
Length=98460
Score = 188 bits (208), Expect = 1e-41
Identities = 387/559 (69%), Gaps = 30/559 (5%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| |||| |
Sbjct 71764 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCTTCCTTCTGGACAGCTGAGGAGATCGATC 71822
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTC 1455887
|| | || |||| ||||| || |||| ||||||| | |||
Sbjct 71823 TCTCCAAGGATCTTCACG----ACTGGAACAACCGTCTGACTTCAGACGAGCAATACTTC 71878
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| | || || ||| ||||| ||| |||||||||||| ||||||||| |
Sbjct 71879 ATCTCCCACATTCTTGC-TTTCTTCGCTGCCTCCGATGGCATCGTCAACGAGAACCTCGT 71937
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| || || | |||||||| | || ||||| || | || || || ||||||||
Sbjct 71938 TGAGCGTTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGCTTCCAGAT 71997
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || ||||||||||| ||||| ||||| || || || ||||||||| |||||||
Sbjct 71998 CATGATGGAGAACATCCACTCCGAAACATACTCCCTGCTCATTGACACCTACATCAAGGA 72057
Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126
||| | || | || ||||||| |||| | ||||| | || | | | || |
Sbjct 72058 CCCTGCTCAG-CGCACATACCTCTTCAACGCCGTTGACACCATTCCTTGCATCCGAAAGA 72116
Query 1456127 AGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183
|||| || ||||| || |||||| ||||| | ||| | |||||| ||||
Sbjct 72117 AGGCGGATTGGGCCATCCGATGGATCCAGGACAAGAA----CTCTTC-CTTTGCTCAGCG 72171
Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCGCCATC 1456240
|| || | ||||| || || ||||| ||||| ||| | | || || || |||||
Sbjct 72172 TCTTGTAGCTTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTTGCT--TCCATC 72229
Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300
|| |||||||||||||||||||||||||| |||| | ||||| |||||| | |||
Sbjct 72230 TTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTC-TGAGCTTTTCCAACGAGCTCATCTC 72288
Query 1456301 TCGCGACGA-AGTTTTCAC 1456318
||| || || || |||||
Sbjct 72289 TCGTGATGAGGGTCTTCAC 72307
>seq51
Length=398837
Score = 93.3 bits (102), Expect = 6e-13
Identities = 202/294 (69%), Gaps = 10/294 (3%)
Strand=Plus/Minus
Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951
|||||| |||| ||| ||||| ||| |||| ||||| | || || ||||| || ||
Sbjct 43846 CATGTCA-AGCAAGTTCTTCAC-TCATGCGAGCCCCACTTTATTCAACGCCGGTACCCCA 43789
Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011
| || || || || ||||| || | || ||||||| || || || || |||
Sbjct 43788 CAGCCTCAACTATCATCATGCTTCCTTGTTGATATGAAGGAGGACAGCATTGATGGTATC 43729
Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTT---T 260068
|| || || |||||| || || | || |||||| ||| || || || || || |
Sbjct 43728 TACGATACTCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCTTGAAT 43669
Query 260069 GCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAAC 260128
||| ||| || | || ||| | ||| | ||| | || || ||||| || ||||||
Sbjct 43668 GCC-CACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTACCAATGGTACTTCCAAC 43612
Query 260129 GGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
|| | || |||||||| || || || ||| |||| || || ||||||||||||
Sbjct 43611 GGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCAG 43558
Score = 91.5 bits (100), Expect = 2e-12
Identities = 173/253 (68%), Gaps = 14/253 (6%)
Strand=Plus/Minus
Query 263171 CCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC----CAACCGGGTGACCATT 263226
||||| |||||||||| | |||||| ||||||||| | | | || || || ||
Sbjct 42398 CCGATATCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTGTGCAG- 42340
Query 263227 GATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC 263286
||||| || ||||| | ||| |||||||| ||||| |||||| | || |
Sbjct 42339 ---ATGGCTGCGGACCGTGGTGCCTTCATCGACCAGTCTCAGTCTCTCAACATTCACATG 42283
Query 263287 GCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGC 263343
||||| || || | ||| || || |||||| | || ||| | |||
Sbjct 42282 AAGGACCCTACAATGGGCAAGATCACCAGC---ATGCACTTCGCTGGCTGGAAGCTCGGT 42226
Query 263344 CTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACC 263403
|||||||| ||||||||||| || || || | | | |||||| | |||| || ||||||
Sbjct 42225 CTCAAGACCGGCATGTACTACCTCCGTACACAGGCTGCTGCCGCCCCCATCCAGTTCACC 42166
Query 263404 GTCGATCAGGCGA 263416
|||||||||| ||
Sbjct 42165 GTCGATCAGGAGA 42153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177764806665922
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |