Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq126 183 9e-41
seq174 114 4e-20
seq46 105 2e-17
>seq126
Length=335456
Score = 183 bits (202), Expect = 9e-41
Identities = 695/1081 (64%), Gaps = 25/1081 (2%)
Strand=Plus/Plus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | || |||||
Sbjct 284953 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 285012
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || || | || || || | || ||
Sbjct 285013 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 285072
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435
|| || || || |||||| | || ||| | ||||| | |||| || ||
Sbjct 285073 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGG--TC----CAG 285126
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495
| ||| | || || || || || || | | | | ||| | || || || | ||
Sbjct 285127 GCCGATATGAAGCACTTCCCCTTCACAATCAT-CGACAAGGC--TGGCAAGCCCGTCATC 285183
Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555
|||||||| | || ||||| | || || ||||| || || || | ||| |
Sbjct 285184 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 285243
Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615
| || ||| || | |||||| | || | || || || || | | || |||
Sbjct 285244 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCCGTT 285303
Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675
| || || || ||||| || ||||| | |||||| || || || ||||| || |
Sbjct 285304 GTCACCGTCCCTGCCTACTTCAATGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 285363
Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735
|| || || | || ||||| |||| || || || || || ||||| || ||||| ||
Sbjct 285364 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCTTAC 285423
Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| || || || | | ||| || || | || || || ||| | |||||||||
Sbjct 285424 GGTCTCGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 285483
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
|| || ||||| || || || || |||| ||||| || || || || || | || ||
Sbjct 285484 ACCTTCGATGTCTCTCTCCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCC 285543
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915
||||| || || | ||||| |||||||| ||||| ||||||||| || || || ||
Sbjct 285544 GGTGACACTCACTTGGGTGGTGAAGATTTCGATAACCGTCTCGTTAACCACTTCGTCAAC 285603
Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAA--TCCTAGAGCAATGCGTCGCC 349973
|| || ||||| || ||| | ||| || | || ||| | || | || || |
Sbjct 285604 GAGTTCAAGCGAAAACATAAGAAGGATCTTAGCACCAACGTCC--GTGCTCTCCGACGTC 285661
Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTG 350033
| |||| || ||||||||||| ||||| | | || ||| | | || ||||| ||||
Sbjct 285662 TTCGAACCGCTTGTGAACGTGCCAAGCGAACTCTCTCTTCTTCCGCTCAGACCTCCATTG 285721
Query 350034 AAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093
| || || ||||| || || | || |||| |||| || || |||||||| || |
Sbjct 285722 AGATCGACTCTCTCTTCGAGGGTATTGACTTCTACACATCCATCACCCGTGCTCGTTTCG 285781
Query 350094 AAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAG 350153
| || | || |||||| || || | || || | ||||| || || | | |
Sbjct 285782 AGGAGCTCTGCCAGGATCTCTTCCGATCCACTATCCAGCCTGTCGACCGTGTCCTTACCG 285841
Query 350154 ATGCAAAAATGTCCAAAAATCAGATTG---ATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210
| || || | || | || || ||| | || | || | || ||||| ||||| |
Sbjct 285842 ACGCCAAGA--TCGACAAGTC-CCTTGTCCACGAGATCGTCCTCGTCGGTGGATCTACCC 285898
Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGAT 350270
|||| || || || || | | | || | || || || || || || | |
Sbjct 285899 GTATCCCCCGTGTCCAGAAGCTCATCACCGACTACTTCAACGGAAAGGAGCCCAACAAGT 285958
Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330
| || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | ||||
Sbjct 285959 CCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCCATTCTCTCTG 286018
Query 350331 G 350331
|
Sbjct 286019 G 286019
Score = 107 bits (118), Expect = 6e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 378232 ATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATT 378291
|| |||||||||| | || || || ||||||||||| | ||| | |||||| ||||
Sbjct 8718 ATGTAACCAGTTTCAGCTGTCTTGACCGCAGTATCAATGAGACCTTCTCGACCAGCCATG 8777
Query 378292 GCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCT 378351
|| |||||||| || || | || ||||| |||| | | || |||| | || ||
Sbjct 8778 GCGTGGAAGAAAAACTCGCTGGGGGTAAGACCACGCAGGTAAGAGTTCTCGACGAAACCA 8837
Query 378352 CTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCA 378411
| || | || |||| ||||| || || ||||||| | ||||||| || || |||
Sbjct 8838 CGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATACTTGAAACCA 8897
Query 378412 TATGGAATTCGTTTTCCATCAACATTCTGTTGACCAA 378448
| ||||| || ||||| ||||| |||| |||||||
Sbjct 8898 AAGGGAATACGCTTTCCTTCAACGATCTGCTGACCAA 8934
Score = 87.8 bits (96), Expect = 5e-12
Identities = 109/149 (73%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||||| | || |||||||| | || || ||| || || | |||||||| ||
Sbjct 7914 ATTTCTTTGAGACGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAA 7970
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
||||| || || || || | ||||| | ||||||||||| ||||| || || | |||
Sbjct 7971 TGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACA 8030
Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594
|||||||| || ||||| ||||| | |||
Sbjct 8031 CCAACCATCTCACCAGGGTTGACGAAAGC 8059
>seq174
Length=222900
Score = 114 bits (126), Expect = 4e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || ||||| || || || || || ||||| || || ||
Sbjct 54279 CATACCACCACGAAGGCGAAGCACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTC 54338
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| ||||| || ||||| || || || || || | || ||||| |||||
Sbjct 54339 GGAGAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGG 54398
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || | || || || || || | || |||| ||
Sbjct 54399 GGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGATGACTC 54458
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| || || || || || || || ||||||||
Sbjct 54459 GACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509
Score = 100 bits (110), Expect = 9e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || | |||||||| ||||| || || || || || || ||
Sbjct 53996 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 54055
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| ||||| || || || || || || ||||||||||| || || ||||| ||||||||
Sbjct 54056 AGGGTTCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGG 54115
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| || || || |||||||| || | || || || || || | || || | || ||
Sbjct 54116 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACC 54175
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || || | ||||| || || || || || ||
Sbjct 54176 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 54210
>seq46
Length=272426
Score = 105 bits (116), Expect = 2e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || || || || || ||
Sbjct 233955 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 234014
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| || || || || ||||||||||| || || ||||| || ||
Sbjct 234015 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 234074
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || ||||| | || || | ||
Sbjct 234075 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 234134
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || |||||||||||
Sbjct 234135 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 234185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515245061771243
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |