Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq126 183 9e-41 seq174 114 4e-20 seq46 105 2e-17 >seq126 Length=335456 Score = 183 bits (202), Expect = 9e-41 Identities = 695/1081 (64%), Gaps = 25/1081 (2%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 284953 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 285012 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || || | || || || | || || Sbjct 285013 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 285072 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | ||||| | |||| || || Sbjct 285073 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGG--TC----CAG 285126 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || || || || | | | | ||| | || || || | || Sbjct 285127 GCCGATATGAAGCACTTCCCCTTCACAATCAT-CGACAAGGC--TGGCAAGCCCGTCATC 285183 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || ||||| | || || ||||| || || || | ||| | Sbjct 285184 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 285243 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | |||||| | || | || || || || | | || ||| Sbjct 285244 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCCGTT 285303 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || ||||| || ||||| | |||||| || || || ||||| || | Sbjct 285304 GTCACCGTCCCTGCCTACTTCAATGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 285363 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || || || ||||| || ||||| || Sbjct 285364 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCTTAC 285423 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || || | | ||| || || | || || || ||| | ||||||||| Sbjct 285424 GGTCTCGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 285483 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || || || | || || Sbjct 285484 ACCTTCGATGTCTCTCTCCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCC 285543 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| |||||||| ||||| ||||||||| || || || || Sbjct 285544 GGTGACACTCACTTGGGTGGTGAAGATTTCGATAACCGTCTCGTTAACCACTTCGTCAAC 285603 Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAA--TCCTAGAGCAATGCGTCGCC 349973 || || ||||| || ||| | ||| || | || ||| | || | || || | Sbjct 285604 GAGTTCAAGCGAAAACATAAGAAGGATCTTAGCACCAACGTCC--GTGCTCTCCGACGTC 285661 Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTG 350033 | |||| || ||||||||||| ||||| | | || ||| | | || ||||| |||| Sbjct 285662 TTCGAACCGCTTGTGAACGTGCCAAGCGAACTCTCTCTTCTTCCGCTCAGACCTCCATTG 285721 Query 350034 AAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093 | || || ||||| || || | || |||| |||| || || |||||||| || | Sbjct 285722 AGATCGACTCTCTCTTCGAGGGTATTGACTTCTACACATCCATCACCCGTGCTCGTTTCG 285781 Query 350094 AAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAG 350153 | || | || |||||| || || | || || | ||||| || || | | | Sbjct 285782 AGGAGCTCTGCCAGGATCTCTTCCGATCCACTATCCAGCCTGTCGACCGTGTCCTTACCG 285841 Query 350154 ATGCAAAAATGTCCAAAAATCAGATTG---ATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 | || || | || | || || ||| | || | || | || ||||| ||||| | Sbjct 285842 ACGCCAAGA--TCGACAAGTC-CCTTGTCCACGAGATCGTCCTCGTCGGTGGATCTACCC 285898 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGAT 350270 |||| || || || || | | | || | || || || || || || | | Sbjct 285899 GTATCCCCCGTGTCCAGAAGCTCATCACCGACTACTTCAACGGAAAGGAGCCCAACAAGT 285958 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330 | || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | |||| Sbjct 285959 CCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCCATTCTCTCTG 286018 Query 350331 G 350331 | Sbjct 286019 G 286019 Score = 107 bits (118), Expect = 6e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 378232 ATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATT 378291 || |||||||||| | || || || ||||||||||| | ||| | |||||| |||| Sbjct 8718 ATGTAACCAGTTTCAGCTGTCTTGACCGCAGTATCAATGAGACCTTCTCGACCAGCCATG 8777 Query 378292 GCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCT 378351 || |||||||| || || | || ||||| |||| | | || |||| | || || Sbjct 8778 GCGTGGAAGAAAAACTCGCTGGGGGTAAGACCACGCAGGTAAGAGTTCTCGACGAAACCA 8837 Query 378352 CTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCA 378411 | || | || |||| ||||| || || ||||||| | ||||||| || || ||| Sbjct 8838 CGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATACTTGAAACCA 8897 Query 378412 TATGGAATTCGTTTTCCATCAACATTCTGTTGACCAA 378448 | ||||| || ||||| ||||| |||| ||||||| Sbjct 8898 AAGGGAATACGCTTTCCTTCAACGATCTGCTGACCAA 8934 Score = 87.8 bits (96), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | || |||||||| | || || ||| || || | |||||||| || Sbjct 7914 ATTTCTTTGAGACGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAA 7970 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || || || | ||||| | ||||||||||| ||||| || || | ||| Sbjct 7971 TGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACA 8030 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594 |||||||| || ||||| ||||| | ||| Sbjct 8031 CCAACCATCTCACCAGGGTTGACGAAAGC 8059 >seq174 Length=222900 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || || || || || ||||| || || || Sbjct 54279 CATACCACCACGAAGGCGAAGCACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTC 54338 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || ||||| || || || || || | || ||||| ||||| Sbjct 54339 GGAGAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGG 54398 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || || || || || | || |||| || Sbjct 54399 GGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGATGACTC 54458 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 54459 GACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509 Score = 100 bits (110), Expect = 9e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | |||||||| ||||| || || || || || || || Sbjct 53996 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 54055 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | ||||| || || || || || || ||||||||||| || || ||||| |||||||| Sbjct 54056 AGGGTTCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGG 54115 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || |||||||| || | || || || || || | || || | || || Sbjct 54116 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACC 54175 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || | ||||| || || || || || || Sbjct 54176 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 54210 >seq46 Length=272426 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 233955 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 234014 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 234015 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 234074 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || ||||| | || || | || Sbjct 234075 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 234134 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 234135 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 234185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515245061771243