Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq51 232 7e-56
seq19 156 5e-33
>seq51
Length=398837
Score = 232 bits (256), Expect = 7e-56
Identities = 519/770 (67%), Gaps = 22/770 (3%)
Strand=Plus/Minus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|| ||| || | ||||||| ||||| | |||||| |||||| | |||||||
Sbjct 43923 CCGCAGCATATGATCATGCGAGTCGCTGTCGGTATCTGGGGTGACAATATTGAGCGTGTC 43864
Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297
|| || ||| || | ||| ||| |||| ||| || || || | || || | |
Sbjct 43863 TTGGAAACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCGAGCCCCACTTTAT 43806
Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357
||||||| ||||| || ||||| | || |||||||| || | |||||||| |
Sbjct 43805 TCAACGCCGGTACCCCACAGCCTCAACTATCATCATGCTTCCTTGTTGATATGAAGGAGG 43746
Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417
|| || || || |||||||| || |||||| |||||| || |||||| | | |
Sbjct 43745 ACAGCATTGATGGTATCTACGATACTCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 43686
Query 53418 GTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGAC 53475
||||||| || | | ||| | | || ||||||| | ||| | ||| || ||
Sbjct 43685 GTGGTATTGGCTTGAA-TGCCC-ACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTAC 43628
Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|| || || | || ||||| || ||||| || || ||||||||||| || || ||
Sbjct 43627 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 43568
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
|||| ||||||||||| ||||| || | |||||||| ||||| ||||| |||||
Sbjct 43567 CGTCGACCAGGGTGGTAACAAGCGACCCGGTGCCTTCGCCATTTACCTTGAGCCATGGCA 43508
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
||||||| | | ||||| || || || || ||| || ||| | || ||| | |||
Sbjct 43507 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGCGC 43448
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||||| ||||| ||||| || || ||||||||| | || |||||| |
Sbjct 43447 TCGTGACCTGTTCCTCGCTCTTTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAA 43388
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTG 53774
|| || ||| || |||||||| ||||||||||| || | | | | || ||||||||
Sbjct 43387 CGGCGAATGGACTCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCTGACTG-CTACGGTG 43329
Query 53775 AGGAGTTTAACGAGATGTATCGGACGTACG-----CAGTTC-AGGGCCGCTACAAGAAGA 53828
| |||||| | | |||| | ||||| || | |||| ||| |||
Sbjct 43328 ATGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGCAAGGGTCGC------AAGT 43275
Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888
||||||| | | | ||| | || || ||| || |||| ||||| |||| |
Sbjct 43274 CTATCAAGGCTCAAAAACTTTGGTACGCCATTCTCGAGGCCCAGACAGAGACCGGAAACC 43215
Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
| | |||| |||||||||| |||| ||||||||||| ||||||
Sbjct 43214 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAAC 43165
Score = 102 bits (112), Expect = 9e-17
Identities = 299/449 (67%), Gaps = 15/449 (3%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||| |||||||| || || ||||| || || || | ||||| | ||||||
Sbjct 42639 CGCAACAGTCTGCTCGTTGCTCCTATGCCCACTGCTAGTACCTCGCAGATTCTTGGCAAC 42580
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| |||||||||||| ||||| ||| || || |||
Sbjct 42579 AACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAG 42520
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
|| | ||||| || ||||||| || | || ||| |||
Sbjct 42519 TTCCAAGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGACATGGGTCTTTGGT--CCG 42462
Query 55664 CAG--ATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATT 55717
| || |||| || || | ||| || || || || ||||||| || | |
Sbjct 42461 ATGGTATGAAGAACCGTATCAT-TGCTGAT-GGTGGTTCTATCCAGAACATCCCCAACAT 42404
Query 55718 CCTCTGCG--TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA-AGAGTCTG 55774
|| |||| | |||||| | ||| ||| |||||||||||| | ||| | || ||
Sbjct 42403 CC-CTGCCGATATCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG 42345
Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834
| | ||| ||| || |||||||| | |||||||||||| |||||||| ||||| |
Sbjct 42344 -TGCAGATGGCTGCGGACCGTGGTGCCTTCATCGACCAGTCTCAGTCTCTCAACATTCAC 42286
Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894
||| || | ||| || ||| |||| | | | |||||||| || |||||| ||
Sbjct 42285 ATGAAGGACCCTACAATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGT 42226
Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923
|||||||| || |||||||| || || ||
Sbjct 42225 CTCAAGACCGGCATGTACTACCTCCGTAC 42197
>seq19
Length=542660
Score = 156 bits (172), Expect = 5e-33
Identities = 202/279 (72%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352
|||| ||| || |||||| ||||||||| || |||||||| ||||| ||||| ||
Sbjct 128862 GGTGATAGTCGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGA 128803
Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412
| |||||| | |||||| || |||| | ||| | |||||| | |||||| ||||| |||
Sbjct 128802 GAACCGAAGTTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGA 128743
Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472
|| | | | ||| || ||| || | ||||| ||||| || |||||||| ||
Sbjct 128742 GCAAGGCCAATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCG 128683
Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAG 117532
| ||| || || |||| | | | |||||| ||||| ||| ||| |||||| |||
Sbjct 128682 GACACATAACCTGCCAATTCAACAACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCAC 128623
Query 117533 GCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571
|| || || ||||||||||||| ||||| | ||||||
Sbjct 128622 GCGTAGATGACCTTGCGCTGACCGGGCTTGAATCCATCC 128584
Score = 116 bits (128), Expect = 4e-21
Identities = 205/299 (69%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| ||||| |||| || | ||||| ||||| |||||||| || || | || ||
Sbjct 128853 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 128794
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| |
Sbjct 128793 TTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAGGCCA 128734
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205
| ||| || || || | |||||||||||| || |||||||| || | | ||
Sbjct 128733 ATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACATAA 128674
Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265
|| ||||| | | |||||| |||| | ||| ||| |||||| || ||||| ||
Sbjct 128673 CCTGCCAATTCAACAACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTAGATG 128614
Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||||||||||| || || || || |||| || ||||| || ||| || ||||
Sbjct 128613 ACCTTGCGCTGACCGGGCTTGAATCCATCCAAAACAGATGGAATAGATCGCATGTTGTC 128555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212709863800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |