Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq51 232 7e-56 seq19 156 5e-33 >seq51 Length=398837 Score = 232 bits (256), Expect = 7e-56 Identities = 519/770 (67%), Gaps = 22/770 (3%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| || | ||||||| ||||| | |||||| |||||| | ||||||| Sbjct 43923 CCGCAGCATATGATCATGCGAGTCGCTGTCGGTATCTGGGGTGACAATATTGAGCGTGTC 43864 Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297 || || ||| || | ||| ||| |||| ||| || || || | || || | | Sbjct 43863 TTGGAAACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCGAGCCCCACTTTAT 43806 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 ||||||| ||||| || ||||| | || |||||||| || | |||||||| | Sbjct 43805 TCAACGCCGGTACCCCACAGCCTCAACTATCATCATGCTTCCTTGTTGATATGAAGGAGG 43746 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 || || || || |||||||| || |||||| |||||| || |||||| | | | Sbjct 43745 ACAGCATTGATGGTATCTACGATACTCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 43686 Query 53418 GTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 ||||||| || | | ||| | | || ||||||| | ||| | ||| || || Sbjct 43685 GTGGTATTGGCTTGAA-TGCCC-ACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTAC 43628 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 || || || | || ||||| || ||||| || || ||||||||||| || || || Sbjct 43627 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 43568 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 |||| ||||||||||| ||||| || | |||||||| ||||| ||||| ||||| Sbjct 43567 CGTCGACCAGGGTGGTAACAAGCGACCCGGTGCCTTCGCCATTTACCTTGAGCCATGGCA 43508 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 ||||||| | | ||||| || || || || ||| || ||| | || ||| | ||| Sbjct 43507 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGCGC 43448 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||||||||| ||||| ||||| || || ||||||||| | || |||||| | Sbjct 43447 TCGTGACCTGTTCCTCGCTCTTTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAA 43388 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTG 53774 || || ||| || |||||||| ||||||||||| || | | | | || |||||||| Sbjct 43387 CGGCGAATGGACTCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCTGACTG-CTACGGTG 43329 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTACG-----CAGTTC-AGGGCCGCTACAAGAAGA 53828 | |||||| | | |||| | ||||| || | |||| ||| ||| Sbjct 43328 ATGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGCAAGGGTCGC------AAGT 43275 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 ||||||| | | | ||| | || || ||| || |||| ||||| |||| | Sbjct 43274 CTATCAAGGCTCAAAAACTTTGGTACGCCATTCTCGAGGCCCAGACAGAGACCGGAAACC 43215 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | | |||| |||||||||| |||| ||||||||||| |||||| Sbjct 43214 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAAC 43165 Score = 102 bits (112), Expect = 9e-17 Identities = 299/449 (67%), Gaps = 15/449 (3%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| |||||||| || || ||||| || || || | ||||| | |||||| Sbjct 42639 CGCAACAGTCTGCTCGTTGCTCCTATGCCCACTGCTAGTACCTCGCAGATTCTTGGCAAC 42580 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| |||||||||||| ||||| ||| || || ||| Sbjct 42579 AACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAG 42520 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| || ||||||| || | || ||| ||| Sbjct 42519 TTCCAAGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGACATGGGTCTTTGGT--CCG 42462 Query 55664 CAG--ATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATT 55717 | || |||| || || | ||| || || || || ||||||| || | | Sbjct 42461 ATGGTATGAAGAACCGTATCAT-TGCTGAT-GGTGGTTCTATCCAGAACATCCCCAACAT 42404 Query 55718 CCTCTGCG--TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA-AGAGTCTG 55774 || |||| | |||||| | ||| ||| |||||||||||| | ||| | || || Sbjct 42403 CC-CTGCCGATATCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG 42345 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 | | ||| ||| || |||||||| | |||||||||||| |||||||| ||||| | Sbjct 42344 -TGCAGATGGCTGCGGACCGTGGTGCCTTCATCGACCAGTCTCAGTCTCTCAACATTCAC 42286 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 ||| || | ||| || ||| |||| | | | |||||||| || |||||| || Sbjct 42285 ATGAAGGACCCTACAATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGT 42226 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923 |||||||| || |||||||| || || || Sbjct 42225 CTCAAGACCGGCATGTACTACCTCCGTAC 42197 >seq19 Length=542660 Score = 156 bits (172), Expect = 5e-33 Identities = 202/279 (72%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| ||| || |||||| ||||||||| || |||||||| ||||| ||||| || Sbjct 128862 GGTGATAGTCGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGA 128803 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 | |||||| | |||||| || |||| | ||| | |||||| | |||||| ||||| ||| Sbjct 128802 GAACCGAAGTTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGA 128743 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 || | | | ||| || ||| || | ||||| ||||| || |||||||| || Sbjct 128742 GCAAGGCCAATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCG 128683 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAG 117532 | ||| || || |||| | | | |||||| ||||| ||| ||| |||||| ||| Sbjct 128682 GACACATAACCTGCCAATTCAACAACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCAC 128623 Query 117533 GCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 || || || ||||||||||||| ||||| | |||||| Sbjct 128622 GCGTAGATGACCTTGCGCTGACCGGGCTTGAATCCATCC 128584 Score = 116 bits (128), Expect = 4e-21 Identities = 205/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||||| |||| || | ||||| ||||| |||||||| || || | || || Sbjct 128853 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 128794 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| | Sbjct 128793 TTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAGGCCA 128734 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | ||| || || || | |||||||||||| || |||||||| || | | || Sbjct 128733 ATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACATAA 128674 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | |||||| |||| | ||| ||| |||||| || ||||| || Sbjct 128673 CCTGCCAATTCAACAACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTAGATG 128614 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||||||||| || || || || |||| || ||||| || ||| || |||| Sbjct 128613 ACCTTGCGCTGACCGGGCTTGAATCCATCCAAAACAGATGGAATAGATCGCATGTTGTC 128555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212709863800