Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq174 89.7 3e-13 seq46 87.8 1e-12 >seq174 Length=222900 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | |||||| ||| |||||| ||||| || ||||| || Sbjct 54511 CCTCCACGAAGGCGAAGCACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGAG 54570 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| || || || || ||||| || || || ||||| ||||| || || Sbjct 54571 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 54630 Query 34600 ACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 54631 ATGCCCTCCTTGTC 54644 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| |||||| || ||||| || || || Sbjct 53996 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 54055 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| || || || ||||| ||||| || | ||||| ||||| || || Sbjct 54056 AGGGTTCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGG 54115 Query 34600 ACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 54116 ATGCCCTCCTTGTC 54129 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | |||||| ||| ||||| |||||||| || || || Sbjct 54283 CCACCACGAAGGCGAAGCACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAG 54342 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || ||||| || ||||| || || || ||||| ||||| || || Sbjct 54343 AGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGA 54402 Query 34600 ACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 54403 ATGCCCTCCTTGTC 54416 >seq46 Length=272426 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||||| || || ||| |||||| || ||||| || || Sbjct 233959 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 234018 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || ||||| ||||| || | ||||| |||||||| || Sbjct 234019 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 234078 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| |||||| Sbjct 234079 ATACCCTCCTTGTCCTGGATC-TTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 234137 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| ||||| || || || | || || || |||||||||||| || Sbjct 234138 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATG 234189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727754996073