Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq174 167 5e-36 seq46 167 5e-36 seq61 125 2e-23 seq51 95.1 3e-14 >seq174 Length=222900 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||||||||| ||||| || |||||||| || || | ||||| Sbjct 54001 ACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 54060 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || || ||||||||||| || ||||||||||| | || Sbjct 54061 TCGACCGTCCTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGGATGCC 54120 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| ||||||||||| || || |||||||| Sbjct 54121 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAG 54180 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| || ||||| ||||| || Sbjct 54181 GGTGATGGTCTTGCCAGTGAGGGTCTTGAC 54210 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || || || ||||| || || || ||||| || || | ||||| Sbjct 54288 ACGAAGGCGAAGCACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGT 54347 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || |||||||| ||||| || | || || |||||||| |||| || Sbjct 54348 TCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGAATGCC 54407 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| ||||||||||| || || |||||||| Sbjct 54408 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGATGACTCGACCTCGAG 54467 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 54468 GGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || || || || |||||||| || || || || ||||| | || Sbjct 54513 TCCACGAAGGCGAAGCACGAGATGGAGTGTGGACTCCTTCTGAATATTGTAATCAGAGAG 54572 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || ||||||||||| ||||| || | || || ||||||||||| | Sbjct 54573 GGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGAT 54632 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||| ||||| ||||| || |||||||| ||||| |||||||| Sbjct 54633 GCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTATCAGATGACTCAACCTC 54692 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || || | ||||| || || | |||||| Sbjct 54693 GAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 54737 >seq46 Length=272426 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | |||||| |||||||| || |||||||| || || ||||| Sbjct 233964 ACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 234023 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || || |||||||| || || ||||| || || | || Sbjct 234024 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 234083 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| || |||||||| || || ||||| || Sbjct 234084 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAG 234143 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| |||||||| ||||| || || | |||||| Sbjct 234144 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 234185 >seq61 Length=421038 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 258729 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 258670 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || || || || || | || ||||||||||||||||| || || || ||| Sbjct 258669 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 258610 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 258609 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 258551 >seq51 Length=398837 Score = 95.1 bits (104), Expect = 3e-14 Identities = 183/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||||||||||||||| | |||| | ||| ||||| |||||||| Sbjct 43160 CCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCA---GTGATCCTTGTAGAGCATGAAGGGG 43216 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 |||| ||| | || ||| |||||||| | |||||| | || || || || | Sbjct 43217 TTTCCGGTCTCTGTCTGGGCCTCGAGAATGGCGTACCAAAGTTTTTGAGCCTTGATAGAC 43276 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 || | || || || |||||||||||| ||| || |||| || || || ||| Sbjct 43277 TTGCGACCCTTGCCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAACTCATCACCGTAG 43336 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||| | ||||| || ||| |||||||| | ||| |||| | |||| | || Sbjct 43337 CAGTCAGCAAGACCAGGGCACTCGTTGGGGCACATAAGAGTCCATTCGCCGTTCTTCTCG 43396 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCA 178353 || || ||||||||||| |||| | |||| Sbjct 43397 ACACGCTTCATGAAGAGATCAGGGATCCA 43425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159144856363565