Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04- 14] 481 sequences; 35,314,756 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq46 114 3e-20 seq174 105 2e-17 seq61 98.7 2e-15 seq51 96.9 8e-15 >seq46 Length=272426 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| || ||||| || ||||||||||| ||| | || | ||||| Sbjct 233973 GAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 234032 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || |||||||| | ||||||||||| | ||| || ||||| || Sbjct 234033 CTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 234092 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 234093 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 234152 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| ||||| | |||||| Sbjct 234153 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 234185 >seq174 Length=222900 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | |||||||| ||||| || ||||||||||| |||| | |||| || || Sbjct 54010 GAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTC 54069 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || |||||||| | ||||||||| | | ||| || ||||| || Sbjct 54070 CTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 54129 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| | || | | |||| || ||| || || || || || || Sbjct 54130 CTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGT 54189 Query 152072 TTTGCCCGTGAGAGTCTTCACGA 152094 ||||| ||||| ||||| |||| Sbjct 54190 CTTGCCAGTGAGGGTCTTGACGA 54212 >seq61 Length=421038 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | |||| ||||| || || || ||||||||||| Sbjct 258729 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 258670 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | |||||| |||| | ||| || ||||| || || || || |||||| | || Sbjct 258669 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 258610 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | | |||| ||| ||| || || || || || || |||||||| || ||||||||||| Sbjct 258609 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 258551 >seq51 Length=398837 Score = 96.9 bits (106), Expect = 8e-15 Identities = 190/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 115639 TTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTCTTTT 115698 |||||| ||||||| || |||||||| ||| || ||||| |||| ||||| | Sbjct 43427 TTTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGAATGGA--CTCTTAT 43370 Query 115699 GT--CCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTTTA 115756 || ||||| || ||||||||||| ||| || ||| ||||||||| ||| || Sbjct 43369 GTGCCCCAACGAGTGCCCTGGTCTTGCTGACTGCTACGGTGATGAGTTTGAGGCTCTGTA 43310 Query 115757 CGAAAGGTACGAGAAAGAGGG-AAGAGCCAAAAGGGTTGTGAAGGCGCAAGACCTTTGGC 115815 ||||| |||||||| |||||| ||| | | || | | | ||||| ||| | |||||| Sbjct 43309 CGAAAAGTACGAGAGAGAGGGCAAGGGTCGCAA-GTCTATCAAGGCTCAAAAACTTTGGT 43251 Query 115816 ATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTACAAAGATGCAG 115875 | || || | | ||| ||||| ||||| ||||| || ||||| ||| || Sbjct 43250 ACGCCATTCTCGAGGCCCAGACAGAGACCGGAAACCCCTTCATGCTCTACAAGGAT-CAC 43192 Query 115876 T-TTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908 | || |||||||| |||||||| | |||| Sbjct 43191 TGCAACCGCAAGAGCAACCAAAAGAACCTTGGTA 43158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153813689218751