Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq46 114 3e-20
seq174 105 2e-17
seq61 98.7 2e-15
seq51 96.9 8e-15
>seq46
Length=272426
Score = 114 bits (126), Expect = 3e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | ||||| || ||||| || ||||||||||| ||| | || | |||||
Sbjct 233973 GAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 234032
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || |||||||| | ||||||||||| | ||| || ||||| ||
Sbjct 234033 CTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 234092
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | |||| ||| ||| || ||||| || || ||
Sbjct 234093 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 234152
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| ||||| ||||| | ||||||
Sbjct 234153 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 234185
>seq174
Length=222900
Score = 105 bits (116), Expect = 2e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | |||||||| ||||| || ||||||||||| |||| | |||| || ||
Sbjct 54010 GAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTC 54069
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || |||||||| | ||||||||| | | ||| || ||||| ||
Sbjct 54070 CTCGAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 54129
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || ||||| | || | | |||| || ||| || || || || || ||
Sbjct 54130 CTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGT 54189
Query 152072 TTTGCCCGTGAGAGTCTTCACGA 152094
||||| ||||| ||||| ||||
Sbjct 54190 CTTGCCAGTGAGGGTCTTGACGA 54212
>seq61
Length=421038
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | |||| ||||| || || || |||||||||||
Sbjct 258729 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 258670
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | |||||| |||| | ||| || ||||| || || || || |||||| | ||
Sbjct 258669 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 258610
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| | |||| ||| ||| || || || || || || |||||||| || |||||||||||
Sbjct 258609 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 258551
>seq51
Length=398837
Score = 96.9 bits (106), Expect = 8e-15
Identities = 190/274 (69%), Gaps = 8/274 (3%)
Strand=Plus/Minus
Query 115639 TTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTCTTTT 115698
|||||| ||||||| || |||||||| ||| || ||||| |||| ||||| |
Sbjct 43427 TTTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGAATGGA--CTCTTAT 43370
Query 115699 GT--CCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTTTA 115756
|| ||||| || ||||||||||| ||| || ||| ||||||||| ||| ||
Sbjct 43369 GTGCCCCAACGAGTGCCCTGGTCTTGCTGACTGCTACGGTGATGAGTTTGAGGCTCTGTA 43310
Query 115757 CGAAAGGTACGAGAAAGAGGG-AAGAGCCAAAAGGGTTGTGAAGGCGCAAGACCTTTGGC 115815
||||| |||||||| |||||| ||| | | || | | | ||||| ||| | ||||||
Sbjct 43309 CGAAAAGTACGAGAGAGAGGGCAAGGGTCGCAA-GTCTATCAAGGCTCAAAAACTTTGGT 43251
Query 115816 ATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTACAAAGATGCAG 115875
| || || | | ||| ||||| ||||| ||||| || ||||| ||| ||
Sbjct 43250 ACGCCATTCTCGAGGCCCAGACAGAGACCGGAAACCCCTTCATGCTCTACAAGGAT-CAC 43192
Query 115876 T-TTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908
| || |||||||| |||||||| | ||||
Sbjct 43191 TGCAACCGCAAGAGCAACCAAAAGAACCTTGGTA 43158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153813689218751
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |