Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20praegraminearum_20[genbank_20GCA_5F002093855.1_202017-04-
14] 481 sequences; 35,314,756 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq46 141 7e-29
seq174 116 3e-21
seq61 113 3e-20
>seq46
Length=272426
Score = 141 bits (156), Expect = 7e-29
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| |||||| ||||||||||| ||| || ||| | || ||
Sbjct 233977 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 234036
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||| | |||||||| || | || | ||| ||||| |||
Sbjct 234037 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 234096
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||||| || |||||||| | || ||||||||
Sbjct 234097 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 234156
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|||||||||||||| ||||| || |||||||||
Sbjct 234157 CCCGTGAGGGTCTTGACGAAAATCTGCATGATG 234189
>seq174
Length=222900
Score = 116 bits (128), Expect = 3e-21
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| || |||||| ||||||||||| |||| ||| || |||| ||
Sbjct 54014 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCG 54073
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||| | |||||||| || | ||| | || ||||| |||
Sbjct 54074 AGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 54133
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||||| || || ||||| | || || |||||
Sbjct 54134 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 54193
Query 44309 CCCGTGAGGGTCTTCACGA 44327
|| ||||||||||| ||||
Sbjct 54194 CCAGTGAGGGTCTTGACGA 54212
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| || || || ||| ||||| || |||||||| |||| ||| || | || ||
Sbjct 54300 CACGAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTC 54359
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| ||||| ||||| || ||||| |||||||| || | || | || ||||| |||
Sbjct 54360 GAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 54419
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||||| || || ||||| | || || |||||
Sbjct 54420 AATCTTGGACTTGACGTTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTT 54479
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| |||||||| |||||
Sbjct 54480 GCCTGTGAGGGTCTTGACGAAGATCTGCAT 54509
>seq61
Length=421038
Score = 113 bits (124), Expect = 3e-20
Identities = 136/183 (74%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| || | || || |||||||| ||||| ||||
Sbjct 258731 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 258672
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| ||||||||||| | || | || ||||| ||| ||||| ||| || |||
Sbjct 258671 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 258612
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | || || ||||| | || || ||||| ||||| |||||||||||
Sbjct 258611 --CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 258554
Query 44326 GAA 44328
|||
Sbjct 258553 GAA 258551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359988289668777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |