Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20proliferatum_20[genbank_20GCA_5F001705295.1_202016-08-15] 237 sequences; 44,205,264 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq43 127 3e-23 seq14 118 2e-20 seq42 107 3e-17 seq38 105 1e-16 >seq43 Length=937570 Score = 127 bits (140), Expect = 3e-23 Identities = 228/328 (70%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | ||||| ||| || || |||||||| || ||||| Sbjct 867613 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCATGAGACCACGCTT 867672 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| || || | ||| || ||| ||||| ||||| || || || || Sbjct 867673 CTTGAGCCAGAAAATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 867732 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||||| || | |||||| | || || | | | | |||||| || ||||| Sbjct 867733 AGCAACGAGACGTTGGGCAAAGGAAG--AGTCCTTATCT-TGGATCCATCGGATGGCCCA 867789 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || ||||| || | | |||| | || || |||||| || |||| ||| | || Sbjct 867790 GTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAAAGGTAGGTTCG-CT 867848 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | || ||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct 867849 GGGCGGGCTCCTTGATATAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTTCT 867908 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||||||| || || || Sbjct 867909 CCATCATGATCTGGAAGCCGTAGAAACA 867936 Score = 109 bits (120), Expect = 9e-18 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 867292 GACACCGGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAG 867351 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--G 794009 ||||| ||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 867352 GGAGATGTTTTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAG 867411 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| |||| || || || |||||||| ||||||||||| ||||||| | | |||| Sbjct 867412 AGCGA--CAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTC 867469 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| || || ||| || | ||| ||| ||||| | || || |||||| Sbjct 867470 ATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGTTCAATGGTGACGGCA 867529 Query 794130 TCGATGATGAT 794140 || ||||||| Sbjct 867530 TCAGTGATGAT 867540 >seq14 Length=298472 Score = 118 bits (130), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| ||| ||||| || ||||| || || | ||||| || Sbjct 73079 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACGACACCGTTCGA 73020 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | || || | |||| | | || Sbjct 73019 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACATTCAGACC 72960 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 72959 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 72900 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | ||||| Sbjct 72899 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 72840 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||||||||||||| Sbjct 72839 GGCATTGAAGAGCGTGGG 72822 >seq42 Length=268022 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| |||||||||||| |||| ||||| ||| | | Sbjct 250329 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGTTCACCGGGGAG 250388 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||| || || | |||||||||||| |||| Sbjct 250389 GATCAGACGAACAGAGGTCTGGATCTCTCGGG 250420 >seq38 Length=1878319 Score = 105 bits (116), Expect = 1e-16 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| || || || | || ||||| || || |||||| | | Sbjct 1029815 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTCGGTTGCAAAACTGTTGCCAACATGA 1029756 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| ||||| || |||||||| || || ||||| | | ||| Sbjct 1029755 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACATTACGAACG 1029705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916221189229043