Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20proliferatum_20[genbank_20GCA_5F001705295.1_202016-08-15] 237 sequences; 44,205,264 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq43 178 2e-38 seq14 105 1e-16 >seq43 Length=937570 Score = 178 bits (196), Expect = 2e-38 Identities = 354/511 (69%), Gaps = 20/511 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | |||| Sbjct 868150 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACC 868092 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| ||| ||| | ||| |||| ||| Sbjct 868091 TCTCCAAGGATCTCCACG----ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTC 868036 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||| || ||| ||||| ||| ||||| || || ||||||||| | Sbjct 868035 GTCTCTCACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGT 867977 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | |||||||| | || ||||| |||| || ||||| |||||||| Sbjct 867976 CGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGAT 867917 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||| ||||| || |||||||| ||||| ||||||||||| ||||||| Sbjct 867916 CATGATGGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACCTATATCAAGGA 867857 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || | | || | ||| |||| || |||||| || || | || | | | || | Sbjct 867856 GCCCGCCCAG-CGAACCTACCTTTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGA 867798 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAG-GAGGGCCTCGACACTTTGCCGAGCGGC 1456185 |||| |||||||| || |||||| |||| | || ||| | ||||||| | || | Sbjct 867797 AGGCTGACTGGGCCATCCGATGGATC--CAAGATAAGGACTCTTC-CTTTGCCCAACGTC 867741 Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 |||| | || || || || ||||| ||||| ||| || ||| | | || || | Sbjct 867740 TCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATTTTCT 867681 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||| || |||||||| ||||| Sbjct 867680 GGCTCAAGAAGCGTGGTCTCATGCCTGGTCT 867650 >seq14 Length=298472 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| ||||||||||| || | || || || || ||||| || | || Sbjct 72822 CCCACGCTCTTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 72881 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 72882 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 72941 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | | ||| | || || | ||| | ||| | Sbjct 72942 AAGATGGCTGGTGGTATTGGTCTGAATGTGCACCGTATCCGTGCTACTGGCTCATACATC 73001 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || ||||| | || || |||||||| || || ||| |||| Sbjct 73002 GCCGGTACCAACGGTACATCGAACGGTGTCGTTCCTATGCTTCGTGTCTTCAACAACACT 73061 Query 260165 GCGCGCTACGTCGACCAG 260182 || || || ||||||||| Sbjct 73062 GCTCGGTATGTCGACCAG 73079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177788340914394