Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20proliferatum_20[genbank_20GCA_5F001705295.1_202016-08-15]
237 sequences; 44,205,264 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq45 174 5e-38
seq47 159 1e-33
seq1 116 1e-20
seq34 111 5e-19
>seq45
Length=147935
Score = 174 bits (192), Expect = 5e-38
Identities = 558/858 (65%), Gaps = 11/858 (1%)
Strand=Plus/Plus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | || |||||
Sbjct 57691 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 57750
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || |||| ||| || || | || ||
Sbjct 57751 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCCCAGAACACT 57810
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441
|| || || || |||||| | || ||| | | || | ||| || | |||
Sbjct 57811 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGACGCTGAGGTTCAGGCCGAT 57870
Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501
| || || || || || | | || | | ||| |||| ||| || | || |||||
Sbjct 57871 ATGAAGCACTTCCCCTTCAAGATCGT-CGACAAG--GGTGGTAAGCCCAACATCGAGGTC 57927
Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGTTTTA 349558
|| | || || || || || || ||| |||| || || || || | ||| | |
Sbjct 57928 GAGTTCAAGGGCGAGACCAAGAC---TTTCACCCCCGAGGAGATCTCTGCTATGATCCTC 57984
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| ||| || | ||||| | || | || || || || | | || ||| ||
Sbjct 57985 ACCAAGATGCGTGAGACCGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCCGTTGTT 58044
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || ||||| || || ||| | |||||| || || || |||||||| |||
Sbjct 58045 ACTGTCCCTGCCTACTTCAACGATTCTCAGCGTCAAGCCACCAAGGATGCTGGTCTCATC 58104
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || ||||| |||| || || || || |||||||| || ||||| || ||
Sbjct 58105 GCCGGTCTCAACGTTCTCCGAATTATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 58164
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||| || | | ||| || || | || || || || | |||||||||||
Sbjct 58165 CTTGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGACCTTGGTGGTGGTACC 58224
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || || |||| ||||| || || || || || | ||||| |||
Sbjct 58225 TTCGATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGGT 58284
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || || || || ||||| || || || || || |||
Sbjct 58285 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTAAATGAA 58344
Query 349919 TTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCT-AGAGCAATGCGTCGCCTAAG 349977
|| ||| | |||| || | ||| | | | | | || |||| || || |
Sbjct 58345 TTCAAGAG-AAAGCACAAGAAGGACTTGAGCACCAACGTCCGCGCCCTGCGACGTCTCCG 58403
Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037
|||||| || || ||||| ||||| | | || || || | || ||||| || || ||
Sbjct 58404 AACTGCTTGCGAGCGTGCCAAGCGAACACTTTCTTCCTCTGCTCAGACCTCGATCGAGAT 58463
Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097
||| ||||| || || | || |||| | || || || |||||||| || || ||
Sbjct 58464 TGACTCTCTCTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGTTTCGAGGA 58523
Query 350098 ATTATGTATGGATCTTTT 350115
| || |||||||||
Sbjct 58524 GCTCTGCCAGGATCTTTT 58541
>seq47
Length=1426776
Score = 159 bits (176), Expect = 1e-33
Identities = 176/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || |||||||| || || ||||| || || ||
Sbjct 447488 CATACCACCACGAAGACGGAGCACCAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTC 447429
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||
Sbjct 447428 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCCGG 447369
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685
||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| |
Sbjct 447368 GGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 447310
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| || |||| |||||||| || || || || || || || |||||
Sbjct 447309 CGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 447258
Score = 154 bits (170), Expect = 4e-32
Identities = 175/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||||||||||||||| ||||| || ||||| || |
Sbjct 446982 TTTGCATACCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGT 446923
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
||||||| | || || || || ||||| || || || || || || | ||||||||| |
Sbjct 446922 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAACGTTGCTGGT 446863
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || | || ||||| || || | || || |
Sbjct 446862 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAG 446803
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || | ||||| |||||||| || || || || ||||||||
Sbjct 446802 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 446748
Score = 134 bits (148), Expect = 4e-26
Identities = 176/241 (73%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 140498 AATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAAT 140557
|||| |||| ||||| || | || ||||| || || ||||| ||||| || || ||
Sbjct 447725 AATAGCTTACTGGCCACCGCGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGAT 447666
Query 140558 ATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTG 140617
||||| || | || || |||||||| | || || ||||| ||||| ||||| ||
Sbjct 447665 GTTATAGTCGCTCAGGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTG 447606
Query 140618 CTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAAT 140676
||||||||| ||||| || || ||||||||||| || ||| || || || || || | |
Sbjct 447605 CTGATCAGGGGGAATGCCCTCCTTATCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGT 447547
Query 140677 CAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736
|| | ||||| ||||| || | |||||||| || || || || || ||||||||||
Sbjct 447546 CACTAGACTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCA 447487
Query 140737 T 140737
|
Sbjct 447486 T 447486
Score = 127 bits (140), Expect = 6e-24
Identities = 162/223 (73%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || |||||||| ||||| || || || || || |
Sbjct 447264 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGGATGTTGT 447205
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | | ||||| || ||||| ||||| ||||||||||| || || || ||||| |
Sbjct 447204 AGTCGGCAAGGGTTCGACCGTCTTCCAGTTGCTTTCCAGCAAAAATCAGGCGCTGCTGGT 447145
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||| || || || || ||||| || || | || ||||| || || | ||| || |
Sbjct 447144 CAGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTATCGGACG 447085
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || ||||| || | ||||| || || || || || ||
Sbjct 447084 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 447042
>seq1
Length=307104
Score = 116 bits (128), Expect = 1e-20
Identities = 106/133 (80%), Gaps = 3/133 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|||||||||||| | ||||||||| || || | |||||||| || ||||| || ||
Sbjct 74173 CGTGGCACACCAAGAGTAACATTC---TTGGACGACACACCAGCGAAATGGAAGGTGTTC 74229
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | ||||||| ||||||||||| |||||||| || | ||| |||||||||||
Sbjct 74230 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 74289
Query 377578 CCAGGATTGACAA 377590
||||| |||||||
Sbjct 74290 CCAGGGTTGACAA 74302
Score = 116 bits (128), Expect = 1e-20
Identities = 192/276 (70%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260
|||||| | || |||| | |||||| ||||||||| |||| ||| || || ||
Sbjct 74934 ATCTTCCAGAGCCTTAACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACCGC 74993
Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320
||||||||| | ||| | |||||| |||| || |||||||| || || | ||||| ||
Sbjct 74994 AGTATCAATAAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGCTGGGAGTGAG 75053
Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380
|||| | | || |||| | ||| || | || | || || | ||| | || ||
Sbjct 75054 ACCACGGAGGTAAGAGTTCTCGACAAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 75113
Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440
| ||||||||||| |||| || || || | ||||| || || || |||||| | ||
Sbjct 75114 GAAGTGAGGTAATGTGCGATACTTGAAACCGAAAGGAATACGCTTGCCTTCAACAATTTG 75173
Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473
|||| |||| |||| |||||||| ||||||
Sbjct 75174 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 75206
>seq34
Length=1002739
Score = 111 bits (122), Expect = 5e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || ||||| ||||| || || || || || ||
Sbjct 516970 CATACCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 517029
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| || || || || ||||||||||| || || ||||| |||||
Sbjct 517030 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGG 517089
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || || || | || || | ||
Sbjct 517090 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 517149
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || |||||||||||
Sbjct 517150 CACCTCAAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 517200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515249798835311
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |