Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20proliferatum_20[genbank_20GCA_5F001705295.1_202016-08-15]
237 sequences; 44,205,264 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq47 178 3e-39
seq34 172 1e-37
seq41 134 3e-26
seq14 114 3e-20
>seq47
Length=1426776
Score = 178 bits (196), Expect = 3e-39
Identities = 172/221 (78%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| || || ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 447706 CGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTG 447647
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| |||||||||| |||||| || ||||||||||| || || || ||||| |||| ||
Sbjct 447646 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATGCCC 447587
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||| ||||| ||||| |||||||| ||||| |||||| |||||||| ||
Sbjct 447586 TCCTTATCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTAGACTCAACCTCAAGG 447527
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| ||||||||||| || || | ||||||
Sbjct 447526 GTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 447486
Score = 154 bits (170), Expect = 3e-32
Identities = 154/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || ||||| || || || || |||||||| || || |||||||| | || |||
Sbjct 447241 AGGACGAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGACCGTCT 447182
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||| ||||| || || || || ||||| || ||||||||||| | || |||||||||
Sbjct 447181 TCCAGTTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 447122
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||| || || || ||||| |||||||| |||
Sbjct 447121 TGGATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 447062
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||| ||||| ||
Sbjct 447061 TTGCCAGTGAGGGTCTTGAC 447042
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| |||||||||||||| || || ||||| ||||| | || || | || ||
Sbjct 446959 AGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 446900
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || | ||||| ||||| || || | || |||||||||
Sbjct 446899 TCAAGCTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 446840
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || ||||| ||||| || ||||||||||| ||||| |||
Sbjct 446839 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 446780
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 446779 TTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 446748
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||| ||||| || || || || ||||| || || | ||| ||
Sbjct 447479 ACGAAGACGGAGCACCAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 447420
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || || |||||||| || ||||| || || ||||| || || |||| ||
Sbjct 447419 TCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCCGGGGGAATACC 447360
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| ||||| || || ||||| || || || || || ||
Sbjct 447359 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 447300
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || |||||||| || || ||||| || || | |||||
Sbjct 447299 AGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 447258
>seq34
Length=1002739
Score = 172 bits (190), Expect = 1e-37
Identities = 167/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| ||||||||||| || |||||||| || || ||||| | |||||
Sbjct 516989 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 517048
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || |||||||| || | || |||||||||
Sbjct 517049 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 517108
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || || ||||| || |||||||||
Sbjct 517109 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 517168
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| ||||| || || | |||||| ||
Sbjct 517169 TTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 517203
>seq41
Length=801936
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | || || | ||||| || || ||||| || ||||||||
Sbjct 757745 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGTTGCTTACCAGCGAAGATC 757804
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || |||||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 757805 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 757864
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || ||
Sbjct 757865 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 757923
>seq14
Length=298472
Score = 114 bits (126), Expect = 3e-20
Identities = 193/278 (69%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||||||||| ||||| | |||| |||||| ||||| ||||| || ||||
Sbjct 73472 GTTCTTTTGGTTACTCTTGCGGTTGCA---GGCATCCTTGTAGAGCATGAATGGGTTTCC 73416
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||||| || ||| | |||||| | |||||||| ||| || || |||||
Sbjct 73415 GGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATCGTCTTGCG 73356
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
| || || | ||||||||||||| ||| || ||||||| ||| ||| ||| ||
Sbjct 73355 ACCCTTGCCCGCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTC 73296
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329
|||| || || |||||||||||| | || |||| | ||||| | || || ||
Sbjct 73295 GGCGAGGCCAGGGCACTCATTGGGGCACATAAGTGTCCAGTCACCGTTCTTCTCAACACG 73236
Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
|||||||| || |||| | |||| | |||| |||||
Sbjct 73235 CTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAA 73198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159148480162505
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |