Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20proliferatum_20[genbank_20GCA_5F001705295.1_202016-08-15] 237 sequences; 44,205,264 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq47 178 3e-39 seq34 172 1e-37 seq41 134 3e-26 seq14 114 3e-20 >seq47 Length=1426776 Score = 178 bits (196), Expect = 3e-39 Identities = 172/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 447706 CGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTG 447647 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||| |||||| || ||||||||||| || || || ||||| |||| || Sbjct 447646 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATGCCC 447587 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||| ||||| |||||||| ||||| |||||| |||||||| || Sbjct 447586 TCCTTATCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTAGACTCAACCTCAAGG 447527 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||||||||| || || | |||||| Sbjct 447526 GTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 447486 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || || || || |||||||| || || |||||||| | || ||| Sbjct 447241 AGGACGAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGACCGTCT 447182 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| ||||| || || || || ||||| || ||||||||||| | || ||||||||| Sbjct 447181 TCCAGTTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 447122 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| || || || ||||| |||||||| ||| Sbjct 447121 TGGATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 447062 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 447061 TTGCCAGTGAGGGTCTTGAC 447042 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| |||||||||||||| || || ||||| ||||| | || || | || || Sbjct 446959 AGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 446900 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || | ||||| ||||| || || | || ||||||||| Sbjct 446899 TCAAGCTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 446840 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || ||||||||||| ||||| ||| Sbjct 446839 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 446780 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 446779 TTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 446748 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| ||||| || || || || ||||| || || | ||| || Sbjct 447479 ACGAAGACGGAGCACCAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 447420 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || |||||||| || ||||| || || ||||| || || |||| || Sbjct 447419 TCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCCGGGGGAATACC 447360 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| ||||| || || ||||| || || || || || || Sbjct 447359 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 447300 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || |||||||| || || ||||| || || | ||||| Sbjct 447299 AGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 447258 >seq34 Length=1002739 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || ||||| | ||||| Sbjct 516989 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 517048 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || |||||||| || | || ||||||||| Sbjct 517049 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 517108 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||||||| Sbjct 517109 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 517168 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | |||||| || Sbjct 517169 TTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 517203 >seq41 Length=801936 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | ||||| || || ||||| || |||||||| Sbjct 757745 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGTTGCTTACCAGCGAAGATC 757804 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || |||||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 757805 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 757864 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 757865 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 757923 >seq14 Length=298472 Score = 114 bits (126), Expect = 3e-20 Identities = 193/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||||||||| ||||| | |||| |||||| ||||| ||||| || |||| Sbjct 73472 GTTCTTTTGGTTACTCTTGCGGTTGCA---GGCATCCTTGTAGAGCATGAATGGGTTTCC 73416 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| || ||| | |||||| | |||||||| ||| || || ||||| Sbjct 73415 GGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATCGTCTTGCG 73356 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || || | ||||||||||||| ||| || ||||||| ||| ||| ||| || Sbjct 73355 ACCCTTGCCCGCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTC 73296 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 |||| || || |||||||||||| | || |||| | ||||| | || || || Sbjct 73295 GGCGAGGCCAGGGCACTCATTGGGGCACATAAGTGTCCAGTCACCGTTCTTCTCAACACG 73236 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 |||||||| || |||| | |||| | |||| ||||| Sbjct 73235 CTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAA 73198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148480162505