Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20proliferatum_20[genbank_20GCA_5F001705295.1_202016-08-15] 237 sequences; 44,205,264 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq47 107 1e-18 seq34 91.5 1e-13 >seq47 Length=1426776 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| ||||| || | Sbjct 446748 ATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 446807 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || | || ||||| || || | || || || || Sbjct 446808 GACACTATCGACAATGTCAAGTCCAAGA-TTCAGGACAAGGAGGGCATCCCCCCCGACCA 446866 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || || |||||||| || || || |||| |||||| | |||||||| Sbjct 446867 GCAACGTTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 446926 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || |||||||| | ||| | ||| Sbjct 446927 CATTCAGAAGGAGTCCACTCTTCATCTTGTT 446957 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || ||||| || || ||||| ||||| || || | Sbjct 447258 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 447317 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || ||| | || || ||||| Sbjct 447318 GATACCATTGATAATGTGAAGAGCAAGA-TCCAGGACAAGGAGGGTATTCCCCCGGATCA 447376 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| ||||| || || | || ||| | ||| ||||| Sbjct 447377 ACAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAA 447436 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 447437 CATTCAGAAGGAATCTAC 447454 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| ||||| || ||||| || || ||||| || | Sbjct 447486 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAGTCTAGT 447545 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || ||| || || || || | || || ||||| Sbjct 447546 GACACTATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGCATTCCCCCTGATCAG 447605 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || ||||||| | ||||| | |||| || ||| Sbjct 447606 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCCTGAGCGACTATAAC 447665 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 447666 ATCCAGAAGGAGTCAAC 447682 >seq34 Length=1002739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || |||||||| || || |||||||| || || || || || Sbjct 517203 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTTGAGGTGGAGTCT 517144 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 517143 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 517084 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||| ||||| || || || || | ||||| | |||| ||| Sbjct 517083 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 517024 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 517023 AACATCCAGAAGGAGTCCAC 517004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008623680396