Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20proliferatum_20[genbank_20GCA_5F001705295.1_202016-08-15]
237 sequences; 44,205,264 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq47 107 1e-18
seq34 91.5 1e-13
>seq47
Length=1426776
Score = 107 bits (118), Expect = 1e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| ||||| ||||| || |
Sbjct 446748 ATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 446807
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || ||| | || | || | || ||||| || || | || || || ||
Sbjct 446808 GACACTATCGACAATGTCAAGTCCAAGA-TTCAGGACAAGGAGGGCATCCCCCCCGACCA 446866
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| ||||| || || |||||||| || || || |||| |||||| | ||||||||
Sbjct 446867 GCAACGTTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 446926
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || |||||||| | ||| | |||
Sbjct 446927 CATTCAGAAGGAGTCCACTCTTCATCTTGTT 446957
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||||| || ||||| || || ||||| ||||| || || |
Sbjct 447258 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 447317
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| || ||| | || || |||||
Sbjct 447318 GATACCATTGATAATGTGAAGAGCAAGA-TCCAGGACAAGGAGGGTATTCCCCCGGATCA 447376
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||| ||||| ||||| || || | || ||| | ||| |||||
Sbjct 447377 ACAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAA 447436
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || || || ||
Sbjct 447437 CATTCAGAAGGAATCTAC 447454
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || ||||| ||||| || ||||| || || ||||| || |
Sbjct 447486 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAGTCTAGT 447545
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | | || || ||| || || || || | || || |||||
Sbjct 447546 GACACTATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGCATTCCCCCTGATCAG 447605
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || ||||||| | ||||| | |||| || |||
Sbjct 447606 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCCTGAGCGACTATAAC 447665
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 447666 ATCCAGAAGGAGTCAAC 447682
>seq34
Length=1002739
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || |||||||| || || |||||||| || || || || ||
Sbjct 517203 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTTGAGGTGGAGTCT 517144
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | | || || || ||||| || || | || || ||
Sbjct 517143 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 517084
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||||| | || ||||| ||||| || || || || | ||||| | |||| |||
Sbjct 517083 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 517024
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || ||||||||
Sbjct 517023 AACATCCAGAAGGAGTCCAC 517004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338008623680396
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |