Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20proliferatum_20[genbank_20GCA_5F002234285.1_202017-07-27]
10,475 sequences; 64,162,265 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq129 246 3e-60
seq21 147 2e-30
seq17 134 1e-26
seq39 120 3e-22
>seq129
Length=448370
Score = 246 bits (272), Expect = 3e-60
Identities = 548/810 (68%), Gaps = 18/810 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||| | |||||| | |||||
Sbjct 390289 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTC 390230
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | ||| ||| | | | |||| ||| ||
Sbjct 390229 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTC 390171
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || || || ||||| ||| || || || ||||||||||| || ||||||||
Sbjct 390170 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 390111
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | ||||| ||| | ||||||| || || ||||||||||| |||||| ||
Sbjct 390110 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGATCATGAT 390051
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927
||||||| | ||||| || | || || |||||||||||| || | | || |
Sbjct 390050 GGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACCTATATCAAGGAGCCCGC 389991
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | ||| || | || || |||||||| ||||| || || ||| || | ||||||
Sbjct 389990 C--CAGCGAACCTACCTT--TTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGG 389935
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
| || ||||| | || |||||| | | || | |||| | | | || || || |
Sbjct 389934 CTGACTGGGCCATCCGATGGATCCAAGATAAGGACTCTTCCTTTGCCCAACGTCTCGTTG 389875
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
| ||||| || || ||||| ||||||| || |||||| | || || |||||||
Sbjct 389874 CTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATTTTCTGGCTCA 389815
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| || || |||||||| || ||||| ||| |||||||||||||| | |||||||
Sbjct 389814 AGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCTAACGAGCTCATCTCTCGTGACGAGG 389755
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
|||| || ||||||||||| | || | || | | || | ||| |
Sbjct 389754 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTAAAGGGCCGTGCCAGCAAGC 389695
Query 117228 CG-CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286
| | ||| || ||| |||| || || ||| |||| || ||| |||||||| ||
Sbjct 389694 AGATGATTCA-AGATATCATCACTGATGCCGTCACCATTGAACAGGAGTTCCTCACTGAG 389636
Query 117287 GCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345
|| | | || |||| || || || | || | || ||| ||| ||||| |||||
Sbjct 389635 GCTCTTCCCTGTGC-CCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTT 389577
Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405
|||||| || | || || ||| || | | || ||| |||||| | |||||||
Sbjct 389576 CGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCC 389517
Query 117406 GCTGGACTTTATGAACCTCATCT-CCTTGG 117434
| ||||| ||| | ||||| ||||||
Sbjct 389516 CTTCGACTTCATGGAAAACATCTCCCTTGG 389487
>seq21
Length=1112876
Score = 147 bits (162), Expect = 2e-30
Identities = 162/213 (76%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || ||||| || || || |||||| | || || || |
Sbjct 502293 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTTGAGGTGGAGTCT 502352
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| ||||| || || | ||||| |||||||||||| | ||
Sbjct 502353 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 502411
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| |||||||||| || ||||| ||||| || || | |||||||| | ||||||
Sbjct 502412 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 502471
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||||||| |||| || || || ||
Sbjct 502472 CAACATCCAGAAGGAGTCCACCCTCCACCTGGT 502504
>seq17
Length=1920523
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| |||| || || | ||
Sbjct 1067140 ATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 1067081
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | ||||| || |||| ||||| |||||||||||| | ||||||
Sbjct 1067080 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 1067021
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | || | ||| ||||| ||||| || |||| ||||| ||| || ||||||
Sbjct 1067020 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAAC 1066961
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||||||| |||| || ||||| ||
Sbjct 1066960 ATTCAGAAGGAGTCCACTCTTCATCTTGT 1066932
Score = 111 bits (122), Expect = 2e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || ||||||||| | || || || | |
Sbjct 1066402 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAGTCTAGT 1066343
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || |||| || || |||||||| ||| | || ||
Sbjct 1066342 GACACTATCGACAACG-TGAAGAGCAAGATTCAGGATAAGGAGGGCATTCCCCCAGATCA 1066284
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| || || ||| |||| || | |||||||| | |||||| ||
Sbjct 1066283 GCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCCTGAGCGACTATAA 1066224
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 1066223 CATCCAGAAGGAGTCAACTCTCCACCTCGT 1066194
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
||| |||| || || ||||| ||||| |||||||| | || ||||| | |||| | |
Sbjct 1066852 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 1066793
Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815
| | | | ||| || || | ||||| ||||| ||||| | |||||||| ||
Sbjct 1066792 ATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGC 1066733
Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875
|| || | || || || || ||||| |||| || ||||| ||||||||||||||||
Sbjct 1066732 CTGATTTTTGCTGGAAAGCAACTGGAAGACGGTCGAACCCTTGCCGACTACAACATCCAG 1066673
Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898
||||| | || || ||||| ||
Sbjct 1066672 AAGGAATCTACCCTTCATCTCGT 1066650
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || || ||||| || | || ||||| | ||
Sbjct 1066630 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 1066571
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | ||| || || | ||||| |||||||| ||| |||| ||
Sbjct 1066570 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAA 1066511
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| |||||||||| || ||||| || || || || | || || || ||||||||||
Sbjct 1066510 CAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 1066451
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|| |||||||| | || || || || |||
Sbjct 1066450 ATTCAGAAGGAATCTACTCTCCACCTGGTG 1066421
>seq39
Length=918835
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | |
Sbjct 782615 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 782556
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| ||||||| || |||||
Sbjct 782555 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 782496
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || || || || || | || || ||| |||||||||||||||||||
Sbjct 782495 ATCTTCGCTGGTAAGCAACTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 782436
Query 40879 G 40879
|
Sbjct 782435 G 782435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515151738486000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |