Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20proliferatum_20[genbank_20GCA_5F002234285.1_202017-07-27]
10,475 sequences; 64,162,265 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq17 102 7e-17
>seq17
Length=1920523
Score = 102 bits (112), Expect = 7e-17
Identities = 156/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| || || || ||||| | ||||| || ||||||| |||| || |||||
Sbjct 1067143 ACCATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 1067084
Query 25056 TCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
|| ||||||||||| || || ||| | || | ||| ||||| || || || || ||
Sbjct 1067083 TCCGACACTATCGA--CAATGTCAAGTCCAAGATTCA-GGACAAGGAGGGCATCCCCCCC 1067027
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
||||| || || | ||||| |||||||| || | || || | |||||| | |||
Sbjct 1067026 GACCAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGAT 1066967
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| ||||| || || ||||| || ||| | || ||
Sbjct 1066966 TACAACATTCAGAAGGAGTCCACTCTTCATCTTGTTCT 1066929
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | || || || ||||||| | || || ||||| |
Sbjct 1066402 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAGTCTAGT 1066343
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||||||||| ||||| || || || || || || ||||| || || ||
Sbjct 1066342 GACACTATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGCATTCCCCCAGATCAG 1066283
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| |||| || || || || || || ||||||| |||||| || |||| || ||
Sbjct 1066282 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCCTGAGCGACTATAAC 1066223
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || || || || ||
Sbjct 1066222 ATCCAGAAGGAGTCAACTCTCCA 1066200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433272679587125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |