Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20proliferatum_20[genbank_20GCA_5F002234285.1_202017-07-27] 10,475 sequences; 64,162,265 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq129 351 2e-91 seq20 327 2e-84 >seq129 Length=448370 Score = 351 bits (388), Expect = 2e-91 Identities = 592/845 (70%), Gaps = 18/845 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || |||||||||||||| ||||||| Sbjct 390280 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTCTCCAAGGAT 390221 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || ||| ||| | || |||| ||| || |||| | Sbjct 390220 CTCCACGACTGGAA--CAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCTCACATCC 390163 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| |||||||| || || ||||| |||||||| | | | |||| Sbjct 390162 TTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTG 390103 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | ||||| || || ||||||||||||||||| || |||||| Sbjct 390102 GCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGATCATGATGGAGAACA 390043 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||| ||| || || || |||| || ||| ||| |||| | |||| | Sbjct 390042 TTCACTCCGAGACCTACTCCCTCCTCATCGACACCTATATCAAGGAGCCCGCCCAGCGAA 389983 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||||| ||||| ||||| || ||||||||| |||||||| |||||||| Sbjct 389982 CCTACCTTTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCA 389923 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| | | ||| | | || | | | | || || || || | || | Sbjct 389922 TCCGATGGATCCAAGATAAGGACTCTTCCTTTGCCCAACGTCTCGTTGCTTTCGCTGCTG 389863 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTG 42782 | ||||| ||||||||| || ||||||||||| || |||||||||||| || ||| Sbjct 389862 TTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGTC 389803 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || || |||||||| ||||| |||||| | |||||||| || || | Sbjct 389802 TC-ATGCCTGGTCTGACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACT 389744 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCT-CAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||||| ||| ||||| ||| | ||| | ||| || | | Sbjct 389743 GACTTTGCCTGCCTCCTCCACTC---TCACCTAAAGGGCCGTGCCAGC-AAGCAGATGAT 389688 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | | |||||||| || ||||| || || ||||||||||||| || | || || Sbjct 389687 TCAAGATATCATCACTGATGCCGTCACCATTGAACAGGAGTTCCTCACTGAGGCTCTTCC 389628 Query 42962 C-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | ||| |||| ||||||||||| ||||||||| ||||||| ||| |||||| | Sbjct 389627 CTGTG-CCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 389569 Query 43021 ACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 | | ||||| ||| | ||| || | ||||||| | | |||||||||| Sbjct 389568 ATCGTCTCCTTGTCGCTCTTGGCAACGAGAAG-GTCTACAAGGCCACCAACCCCTTCGAC 389510 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 || ||||| |||||||| | | |||||||||||||| ||||||||||| || |||||| Sbjct 389509 TTCATGGAAAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGAC 389450 Query 43140 TACCA 43144 ||||| Sbjct 389449 TACCA 389445 >seq20 Length=2372104 Score = 327 bits (362), Expect = 2e-84 Identities = 886/1342 (66%), Gaps = 39/1342 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||||| ||| | || || Sbjct 1578765 GTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGG 1578824 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 1578825 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 1578884 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || |||||||| | | |||||| ||| || || || | | ||||||||| Sbjct 1578885 GAGTAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGCCTCCCAGTCCCA 1578944 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | | ||||| | | |||| ||||||||| ||||| || | |||| Sbjct 1578945 GAGGTC--AGAGGGCTTGACGTT-------CCACATGTCGAACTGGAGAATACCCTCAGA 1578995 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCT 244388 | ||||| |||| | |||| | ||||||||| || || ||||||| || | Sbjct 1578996 GGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGGC 1579055 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 || ||| || |||| || |||||||| |||||| ||| || | || || |||| | Sbjct 1579056 AGT-GAGCGCAGCGTGATAAATGGTCTCAAAGATCTGCTTATTGAGCTCACGAGCCTCGG 1579114 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 | | |||||| |||| || | ||| | ||||| || ||||| || || | | Sbjct 1579115 GGGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGACCCTGAACACCAAGAC 1579174 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 | ||||||| ||| ||| |||| | || | || | || || ||||| ||| | Sbjct 1579175 CAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCACA 1579233 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAAA 244626 ||||| | |||||| |||||||| | | || | ||| ||| | | |||| || || Sbjct 1579234 TCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTGTGCAGCTTCTTGAA 1579292 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 |||||| | | | || ||| | || ||| | | | || | || Sbjct 1579293 GTCGTA---GCAAGCCTCATCGTAGTTGATGA-----AGGAGGGCAGAGATAGAGA---- 1579340 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||| |||||||||||||| ||||| || | | ||||| || ||| || ||||| || Sbjct 1579341 GGCAAGGTTGCAGACGGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGTGCAAAG 1579400 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 || || |||||| || |||| || || || |||| ||||||||| ||||| Sbjct 1579401 ATTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAGGCATCCTT 1579460 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 |||||||||||| || |||||||| |||||| | || | | || ||| || | Sbjct 1579461 GTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTT 1579520 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | |||||||| |||| ||||| |||||||| | |||||| |||||| ||||| Sbjct 1579521 CTGAGCCTTGATCGTCTTGCGACCCTTGCCCGCCTTCTCGTACTTTTCGTACAGAGCCTC 1579580 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 |||||| || || ||| | ||||| |||||| |||||||| || |||| Sbjct 1579581 GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCATTGGGGCACATAAGTGTCCA 1579640 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 || ||| | || || | || |||||| || || |||||||| ||||| |||| || Sbjct 1579641 GTCACCGTTCTTCTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAAG 1579700 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 ||| | || | ||| ||| || |||||| | || || | || || ||||| Sbjct 1579701 GTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGAC 1579760 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 ||| |||||| ||||| | ||||| || | || ||||| ||||||||||| ||||| Sbjct 1579761 ATCGGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTG 1579820 Query 245167 GTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 ||| | ||| | ||||| |||||||| || || |||| || | ||||| | Sbjct 1579821 GTCGA-CATAC---CGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACGACACCGTTCG 1579876 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACAT 245280 | |||||||| || |||||| | ||| | | | | | | ||| || || Sbjct 1579877 ATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACAT--TCAG 1579934 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 || | || || || ||||||||| | ||| ||| |||||| || || || || Sbjct 1579935 ACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCC 1579994 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400 ||| || ||||| |||||| | | || ||||| || |||| ||||||| ||| | Sbjct 1579995 CTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGT 1580054 Query 245401 GCACGAGTTGAACAGAGTGGGG 245422 || | ||||| || |||||| Sbjct 1580055 GCCGGCATTGAAGAGCGTGGGG 1580076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944215550586000