Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20proliferatum_20[genbank_20GCA_5F002234285.1_202017-07-27] 10,475 sequences; 64,162,265 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq20 233 2e-56 seq129 118 1e-21 seq3 87.8 2e-12 >seq20 Length=2372104 Score = 233 bits (258), Expect = 2e-56 Identities = 1148/1791 (64%), Gaps = 57/1791 (3%) Strand=Plus/Plus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| || ||| Sbjct 1578421 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 1578480 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || | || | |||||| | || |||| |||||| || Sbjct 1578481 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 1578539 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 1578540 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 1578597 Query 110501 ATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATA 110557 || | | ||| || || | || |||||||| || ||| ||| ||||| | Sbjct 1578598 ATCTGGACGAC---CTGGCGCTGAGAGATCTCCCAAACAGTCTTATACAGAGCCTTGACA 1578654 Query 110558 TCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTC 110617 || | ||||| | | || ||||| |||||||| | | | ||| | | |||| Sbjct 1578655 TCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTC 1578714 Query 110618 ATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATG 110677 ||| | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 1578715 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 1578774 Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 |||||||| ||||| | | ||||||| || | ||||| || || ||||| Sbjct 1578775 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 1578834 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 1578835 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGTAGACTG 1578894 Query 110798 TTACGAAGACCCTTCTCCTTGATGCGTTC-CTTGA-GAACATCCCAGTCGTAGTTG--AG 110853 ||||| | || | ||||| | | | || || || | |||||||| || | || Sbjct 1578895 TTACGGATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGCCTCCCAGTCCCAGAGGTCAG 1578952 Query 110854 CTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTC 110913 || || || |||| ||||||| ||||| || | || | || ||||| ||||||| Sbjct 1578953 AG-GGCTTGACGTTCC-ACATGTCGAACTGGAGAATACCCTCAGAGGCGGGGGAACCCTT 1579010 Query 110914 AAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGT 110972 ||||| |||| ||| | | | ||||| | ||| | || || | |||| Sbjct 1579011 GAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGCGCAGCGT 1579069 Query 110973 GATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGT 111032 |||| ||||| |||||||| | ||| | ||| || || || || || | Sbjct 1579070 GATAAATGGTCTCAAAGATCTGCTTATTGAGCTCACGAGCCTCGGGGGACTCGAAGGGCA 1579129 Query 111033 AGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGT 111091 ||| || | || || |||| || ||||| |||||||| | |||||| |||| ||| Sbjct 1579130 TGCG-CAGAGCAAGGAAAGCATCGGCAAGACCCTGAACACCAAGACCAATGGGTCGGTGG 1579188 Query 111092 CGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTT 111151 ||||| ||| || || || || || || || || || |||| ||| Sbjct 1579189 CGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTC 1579248 Query 111152 AGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC 111211 || || |||||| || ||| | || || || | | || | || || | Sbjct 1579249 AGGTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAGCC 1579305 Query 111212 TCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 111268 || || | ||| | || || | | || || | ||||| || || ||| Sbjct 1579306 TCATCGTAGTTGATGAAGGAGGGCAGAGATAGAGAGGCAAGGTTGCAGACGGCGACCTCG 1579365 Query 111269 TCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAA 111328 || | |||||| | |||||| || || | ||||| || || || || | Sbjct 1579366 TCAGGGGCACAGTACTCGATAATTTCAGTGCAAAGATTGGAGCTTCGGATGGTACCGAGG 1579425 Query 111329 TTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTC 111388 ||||||||||||||||| |||||| |||||||||||||||||| | || | || ||| Sbjct 1579426 TTCTTTTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTC 1579485 Query 111389 TCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG-G 111446 || ||||| | | ||||| || | ||||| | || | | || | || | ||| | Sbjct 1579486 TCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG----ATCGTCTTGCG 1579541 Query 111447 CCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTC 111504 || | ||| || |||||||||| ||| || || || |||||||| || ||| Sbjct 1579542 ACCCTTGCCCGCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTC 1579601 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCG 111564 || ||| || || || | || || | ||| | ||| | ||| | |||||| || Sbjct 1579602 GGCGAGGCCAGGGCACTCATTGGGGCACATAAGTGTCCAGTCACCGTTCTTCTCAACACG 1579661 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTCT 111622 |||||||||||| || || ||||| |||| | | ||| || || | ||| || |||| Sbjct 1579662 CTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAA-AGGTCACGGGCACGGA-CCTCC 1579719 Query 111623 TCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCA 111682 || | ||| ||||| || | ||||||||||| | || ||| | |||||| ||||| Sbjct 1579720 TCCTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCGGAGTGCCAAGGCTCG 1579779 Query 111683 AGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTG 111739 || |||| || | || || ||| ||| | || | ||||| || || ||| Sbjct 1579780 AGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTG 1579839 Query 111740 GCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-A 111797 ||| || || |||||||| |||| | ||| | ||| ||| || || || ||| Sbjct 1579840 TTGTTGAAGACACGAAGCATAGGAACGACACCGTTCGATGTACCGTTGGTACCGGCGATG 1579899 Query 111798 TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 111857 || ||| | | || | | | || | | || |||||||| |||||| ||| | Sbjct 1579900 TATGAG--CCAGTAGCACGGATACGGTGCACATTCAGACCAATACCACCAGCCATCTTGG 1579957 Query 111858 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 111917 |||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 1579958 AGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATAT 1580017 Query 111918 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 111977 | | | ||||||| |||| || || || || || ||||||||||| || || | Sbjct 1580018 CAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGG 1580077 Query 111978 ----TTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCA 112033 |||||||| |||| | | | |||||| || ||||||||||||||| || Sbjct 1580078 AAGCATGCGTGAA-GAACTTGCTT---GACATCAGGTTGTATGTCTCCAAGACTCGCTCG 1580133 Query 112034 ATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || || ||| || | | || ||||||| ||||| ||||||| Sbjct 1580134 ATATCATCACCCCAGATACCAACAGACACACGCATGATCATGTGCTGTGGG 1580184 >seq129 Length=448370 Score = 118 bits (130), Expect = 1e-21 Identities = 302/457 (66%), Gaps = 16/457 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| || ||||| ||||||||||| Sbjct 389448 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTTTCCATG 389507 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | || || | | | | || |||| |||| Sbjct 389508 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 389562 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || |||||||||||| ||| ||||||||||| |||| ||| Sbjct 389563 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 389622 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| || || || || || |||| | | ||||| || || || | | ||| Sbjct 389623 CACAGGGAAGAGCCTCAGTGAGGAACTCCTGTTCAATGGTGACGGCATCAGTGATGATAT 389682 Query 122606 CGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | || || | | | ||| | | || | || | || ||| || ||||| Sbjct 389683 CTTGAATCATCTGCTTGCTGGCACGGCCCTTTAGGTGAGAGTGGAGGAGG--CA-GGCAA 389739 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| |||||||| || || || || || || || |||||| ||||| |||| Sbjct 389740 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCA 389799 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| |||||| | ||| | || |||||||||||||| Sbjct 389800 TGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGCACCACTGAAGAAGATACCCT 389859 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 | ||| || || |||| || |||| ||| ||||| Sbjct 389860 CAACAGCAGCGAAAGCAACGAGACGTTGGGCAAAGGA 389896 >seq3 Length=1745038 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 1152399 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 1152340 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| | ||||| ||| | |||||||| || || Sbjct 1152339 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 1152280 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 1152279 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 1152227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627949767060000