Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20proliferatum_20[genbank_20GCA_5F002234285.1_202017-07-27]
10,475 sequences; 64,162,265 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq39 138 3e-27
seq21 136 9e-27
seq17 134 3e-26
seq71 111 4e-19
seq20 89.7 1e-12
>seq39
Length=918835
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | ||||| ||||| || || ||||| |||||||||||
Sbjct 782437 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGTTGCTTACCAGCGAAGATC 782496
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
||||| |||||||| || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 782497 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 782556
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| || || || | ||||| ||||||||||||| || || | |||
Sbjct 782557 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 782615
>seq21
Length=1112876
Score = 136 bits (150), Expect = 9e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| ||||| || || |||| ||||| ||| || || | |||||
Sbjct 502507 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 502448
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| ||||| || ||||| || || || || ||||||||
Sbjct 502447 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 502388
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | ||||| || | |||||||||
Sbjct 502387 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 502328
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| || || | || || | ||| | ||||| ||
Sbjct 502327 TTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 502293
>seq17
Length=1920523
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || ||||||||||| ||||| || || | ||||| |||| | |||
Sbjct 1066409 ACGAAGACGGAGCACCAGGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 1066468
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| || || ||||| ||||| ||||| ||||| ||||| || || ||||| ||
Sbjct 1066469 TCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCCGGGGGAATGCC 1066528
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||||||| || ||||| || || | || || || |
Sbjct 1066529 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 1066588
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| || || | || || | ||| | ||||||
Sbjct 1066589 AGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 1066630
Score = 114 bits (126), Expect = 3e-20
Identities = 158/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||||| || || ||||||||||| || || || |||| || || ||| || ||
Sbjct 1066182 CGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTG 1066241
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| | |||||| |||||||||||||| || || || || || ||||| ||
Sbjct 1066242 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCC 1066301
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||| || || ||||| |||||| ||||| ||||| | || || || |
Sbjct 1066302 TCCTTATCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTAGACTCAACCTCAAGG 1066361
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || || | ||| || | ||| | |||||
Sbjct 1066362 GTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 1066402
>seq71
Length=46428
Score = 111 bits (122), Expect = 4e-19
Identities = 198/282 (70%), Gaps = 9/282 (3%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499
|| || ||||||||||| | | || ||||| ||||| |||||| ||||| || |
Sbjct 42763 ACATTGTATTTAATATTCGCTCTTTTCTCTGG-ATTATTAGGTACAGCCTTTTCAGTGTT 42821
Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGG-GTTCTCAAATATTGAGTGGTAATAGCCAACTT 7557
|| || | ||| ||||| | | || |||| ||||| | | ||||| ||| |
Sbjct 42822 AATTAGACTTGAACTTAGCGGGCCAGGAGTTC---AATAT--ATTTCTAATAATCAATTA 42876
Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617
|| ||| | | ||||| || || || | | ||||| ||||| | |||||||| |
Sbjct 42877 TATAACAGTGTAATTACAGCTCACGCTATATTAATGATATTCTTCATGGTTATGCCTGCA 42936
Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677
| ||||| || || ||||||| || | ||||||||| | |||| ||| ||||||||
Sbjct 42937 TTAATAGGTGGGTTTGGAAATTTTTTAATGCCTTTAATGGTAGGTGGTCCGGATATGGCA 42996
Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
|| || || | || ||||||||||| |||||| |||| |||
Sbjct 42997 TTCCCTAGATTAAATAATATAAGTTTCTGATTATTACCCCCT 43038
>seq20
Length=2372104
Score = 89.7 bits (98), Expect = 1e-12
Identities = 183/272 (67%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
|| ||||| |||| || | ||| || ||||||| ||||| || | || |||
Sbjct 1579429 TTTTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCA 1579488
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| || || | |||||| | |||||| | ||||| || | ||| | | ||||
Sbjct 1579489 GTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATCGTCTTGCGACCCTTG 1579548
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| || ||||||||||||||||||| |||| || || | ||||||| ||| ||||
Sbjct 1579549 CCCGCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGG 1579608
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || || || ||||| | || |||| || || | | || || | |||||||
Sbjct 1579609 CCAGGGCACTCATTGGGGCACATAAGTGTCCAGTCACCGTTCTTCTCAACACGCTTCATG 1579668
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
|| || |||| |||||| ||| ||||||
Sbjct 1579669 AAAAGATCAGGGATCCAAAGGGCAAGGAAAAG 1579700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192371149269650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |