Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20proliferatum_20[genbank_20GCA_5F900029915.1_202016-12-06]
155 sequences; 43,166,078 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq77 123 3e-22
seq67 118 1e-20
seq114 105 8e-17
seq100 87.8 2e-11
>seq77
Length=52917
Score = 123 bits (136), Expect = 3e-22
Identities = 94/111 (85%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||||||||||||||||||||| || || | || ||||| |||| ||||||||||
Sbjct 28755 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTCGGTTGCAAAACTGTTGCCAACATGA 28696
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||| ||||| ||||||||||| || || ||||| | | |||
Sbjct 28695 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACATTACGAACG 28645
>seq67
Length=1756221
Score = 118 bits (130), Expect = 1e-20
Identities = 181/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| || || || |||| ||| ||||| || ||||| || |||| ||||| ||
Sbjct 1591793 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACGACACCGTTCGA 1591852
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | ||| | ||| | || || | |||| | | ||
Sbjct 1591853 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACATTCAGACC 1591912
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| ||||||||| | || || ||||| || |||||||| |||||
Sbjct 1591913 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1591972
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| |||| ||||||| || || | ||||| || || ||| || || | |||||
Sbjct 1591973 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1592032
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
||| ||||||||||||||
Sbjct 1592033 GGCATTGAAGAGCGTGGG 1592050
>seq114
Length=1428553
Score = 105 bits (116), Expect = 8e-17
Identities = 199/287 (69%), Gaps = 7/287 (2%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | ||||| |||| || || |||||||| || |||||
Sbjct 112792 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCATGAGACCACGCTT 112733
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| || || | | ||| || ||| ||||| ||||| || || || ||
Sbjct 112732 CTTGAGCCAGAAAATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 112673
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCGCCC 869357
| | ||| || | ||||||| | ||| || | |||| |||||| || ||||
Sbjct 112672 AGCAACGAGACGTTGGGCAAAG--GAAGAGTCCTTATCTTG--GATCCATCGGATGGCCC 112617
Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTT 869416
|||| ||||| || | | | || | || || |||||| || |||| ||| |
Sbjct 112616 AGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAAAGGTAGGTTC-GC 112558
Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| ||| || ||||||| |||||||||||| ||||| || ||||||||
Sbjct 112557 TGGGCGGGCTCCTTGATATAGGTGTCGATGAGGAGGGAGTAGGTCTC 112511
Score = 95.1 bits (104), Expect = 1e-13
Identities = 130/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| |||||| |||||||||||||| | || |||||
Sbjct 113106 GCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 113047
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
||||| | ||| ||||||| | ||||||| ||| ||| || |||||||
Sbjct 113046 TTTTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGACA 112987
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
|| || || || ||||| ||||| |||||||| ||||||| | | |||||||||||
Sbjct 112986 --AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGA 112929
>seq100
Length=807942
Score = 87.8 bits (96), Expect = 2e-11
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| ||||| || || || ||| | ||||||||||| | || || || |||
Sbjct 177233 GACAGCACTGGCGGAACTGTCACCTGCATTATCCGCAACGTGCCATCTGGTCTTGGTGAG 177292
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| |||||||||||| || ||||| || ||||||| ||| |||| || || || |
Sbjct 177293 CCCTGCTTTGACAAGCTCCAGGCCAGTCTTGCCCACGGCATTATGTCTATTCCCGCTGTC 177352
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192
|||||||| ||| | || ||||||
Sbjct 177353 AAGGGATTTGAGGTAGGTTCCGGGTT 177378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107126479974135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |