Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 122 8e-23 seq1 104 2e-17 seq2 91.5 1e-13 >seq3 Length=7873615 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 6200842 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 6200901 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || || ||||||||||| Sbjct 6200902 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 6200961 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||| ||||| | ||| | ||| || Sbjct 6200962 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 6201021 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || |||||||||||| Sbjct 6201022 CCCGTGAGGGTCTTGACGAAAATCTGCATG 6201051 >seq1 Length=11834931 Score = 104 bits (114), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | || || |||||||||||| || || ||| |||| Sbjct 6501023 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6500964 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||||||||||| || || |||||||||||||| || || || || | ||| Sbjct 6500963 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6500904 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| ||||||||||| ||| | || ||||| ||||| || || || ||| Sbjct 6500903 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 6500844 Query 118731 ATCTGCATGGC 118741 ||| ||||| Sbjct 6500843 --CTGGATGGC 6500835 >seq2 Length=8944178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || || ||||| || | || || |||||||||||| Sbjct 2591868 TGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGC 2591927 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| | || | ||||||||||| || || || ||||||||||| ||| || Sbjct 2591928 TTGCCGGCGAAAATCAATCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTG 2591987 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| || || | ||| ||||||| ||| | || ||||||||| Sbjct 2591988 GACTTGACATTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTC 2592047 Query 118716 AGAGTTTTTACAAAAATCTGCATGG 118740 | || || || || |||||||||| Sbjct 2592048 AAGGTCTTGACGAAGATCTGCATGG 2592072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830262529992