Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016-
07-14] 26 sequences; 37,070,975 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 98.7 2e-15
>seq1
Length=11834931
Score = 98.7 bits (108), Expect = 2e-15
Identities = 267/405 (66%), Gaps = 34/405 (8%)
Strand=Plus/Plus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
|| ||||| |||| ||| |||| |||||||| ||||| || ||||| || |||||||
Sbjct 4028910 CTCCCTCACATGCTGTTCTACGGCCCTCCCGGTACAGGAAAAACGTCGACTGTCCTGGCA 4028969
Query 254061 CTGGCCC-GAACCCTGTTGGGCGAGGGGAACATGAGAGAGC---GCGTGCTCGAGCTGAA 254116
||||| | | | | ||| | | |||||| || | ||||| ||||| ||
Sbjct 4028970 CTGGCGAAGGAGCTTTATGGTCCCG----ACATGATCAAGTCGAGAGTGCTTGAGCTCAA 4029025
Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTTCTCCAAGA 254175
|||||| || ||||| || | | ||||||| || ||| |||||| |||| | | |
Sbjct 4029026 CGCTTCCGATGAACGTGGTATCTCCATCGTCCGAGAAAAGGTCAAGAACTTTGCGCGA-A 4029084
Query 254176 TGTCGATTTCGTCGTTCCAACCC---GG------------------CTGTCCGCCTTTCA 254214
|| | ||| | | || |||| || ||| || || ||||
Sbjct 4029085 TG-CAATT--GACCAACCCACCCCCTGGATACAAAGACAAATATCCCTGCCCTCCGTTCA 4029141
Query 254215 AGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCC 254274
|| || | ||||| |||||||| ||| ||||||| || || ||| ||| || || |
Sbjct 4029142 AGATCATCATCCTCGACGAGGCCGACTCCATGACCCAAGATGCCCAGAGCGCACTACGAC 4029201
Query 254275 GAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGA 254334
|||| ||||||||| || | | || ||||| || ||| | ||||||||||| |
Sbjct 4029202 GAACCATGGAGACGTACAGCAAGATCACTCGTTTCTGTCTGATTTGCAACTACGTCACTC 4029261
Query 254335 AGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
||| || | ||||| || ||| ||| ||| || |||||||
Sbjct 4029262 GGATTATAGATCCGCTCGCCAGTCGATGCAGCAAATTCCGATTCA 4029306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766042301568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |