Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 2e-15 >seq1 Length=11834931 Score = 98.7 bits (108), Expect = 2e-15 Identities = 267/405 (66%), Gaps = 34/405 (8%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||| |||| ||| |||| |||||||| ||||| || ||||| || ||||||| Sbjct 4028910 CTCCCTCACATGCTGTTCTACGGCCCTCCCGGTACAGGAAAAACGTCGACTGTCCTGGCA 4028969 Query 254061 CTGGCCC-GAACCCTGTTGGGCGAGGGGAACATGAGAGAGC---GCGTGCTCGAGCTGAA 254116 ||||| | | | | ||| | | |||||| || | ||||| ||||| || Sbjct 4028970 CTGGCGAAGGAGCTTTATGGTCCCG----ACATGATCAAGTCGAGAGTGCTTGAGCTCAA 4029025 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTTCTCCAAGA 254175 |||||| || ||||| || | | ||||||| || ||| |||||| |||| | | | Sbjct 4029026 CGCTTCCGATGAACGTGGTATCTCCATCGTCCGAGAAAAGGTCAAGAACTTTGCGCGA-A 4029084 Query 254176 TGTCGATTTCGTCGTTCCAACCC---GG------------------CTGTCCGCCTTTCA 254214 || | ||| | | || |||| || ||| || || |||| Sbjct 4029085 TG-CAATT--GACCAACCCACCCCCTGGATACAAAGACAAATATCCCTGCCCTCCGTTCA 4029141 Query 254215 AGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCC 254274 || || | ||||| |||||||| ||| ||||||| || || ||| ||| || || | Sbjct 4029142 AGATCATCATCCTCGACGAGGCCGACTCCATGACCCAAGATGCCCAGAGCGCACTACGAC 4029201 Query 254275 GAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGA 254334 |||| ||||||||| || | | || ||||| || ||| | ||||||||||| | Sbjct 4029202 GAACCATGGAGACGTACAGCAAGATCACTCGTTTCTGTCTGATTTGCAACTACGTCACTC 4029261 Query 254335 AGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||| || | ||||| || ||| ||| ||| || ||||||| Sbjct 4029262 GGATTATAGATCCGCTCGCCAGTCGATGCAGCAAATTCCGATTCA 4029306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766042301568