Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 >seq3 Length=7873615 Score = 134 bits (148), Expect = 2e-26 Identities = 391/589 (66%), Gaps = 16/589 (3%) Strand=Plus/Minus Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 65800 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 1403474 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1403416 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860 || || | |||||| || | || | ||| || ||||| || || ||| Sbjct 1403415 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGATTGCAGTGATC 1403356 Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 65920 ||| || || ||||| || | ||||| || |||| | || | ||| || | ||| | Sbjct 1403355 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1403297 Query 65921 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACA 65976 | || ||||||| || ||| ||| | ||| ||||| ||||| | |||| Sbjct 1403296 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 1403240 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATC 66035 || || ||||| || | || | ||| ||||| ||||| | || ||||| Sbjct 1403239 GAGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATG 1403181 Query 66036 AACGACCACTCTCCGTCATCCT-TC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 66093 | | ||| || |||| |||| || || || ||||| || |||||||| |||||||||| Sbjct 1403180 AGAGTCCATTCGCCGT--TCCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAG 1403123 Query 66094 CTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 66153 | | || | || | | | ||||| ||||| |||||| ||||| |||| Sbjct 1403122 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 1403063 Query 66154 ACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 66213 || | | | || ||||| || || | ||| ||||| | | ||||| || |||| Sbjct 1403062 ACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGT 1403003 Query 66214 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 66273 | || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| Sbjct 1403002 TACCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACAATAC 1402943 Query 66274 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322 | ||||| ||||||||||| |||| ||| || ||| | ||||| || Sbjct 1402942 CGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT 1402894 Score = 132 bits (146), Expect = 6e-26 Identities = 358/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| |||||||| || | | ||| | ||||||||||| | || || ||||| ||||| Sbjct 2197006 GTGAAGACCCTCATCACGAGAAATGAGCTCGTTGGAAAAGCTCAGACCAGGCATGAGGCC 2197065 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 |||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 2197066 ACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 2197125 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCA-CTTTTGAG 36347 ||||| |||| ||| | || || || | |||| || ||||| | || | Sbjct 2197126 AGCAAAAGCAACAAGACGCTGAGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGATG-G 2197184 Query 36348 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 36407 ||||||| ||||||||| | ||||| || || || | || || ||||| || | Sbjct 2197185 CCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC 2197244 Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 | | || || | || ||||| || | || || |||| || || |||| Sbjct 2197245 GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2197304 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 | || || || || || || ||||| |||| |||||||| ||||| || || | Sbjct 2197305 TCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGC 2197364 Query 36528 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 36587 ||||| || | | || ||||| || || ||||| ||| || || || || | | Sbjct 2197365 TGAATCGCTCAACAAGGTTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAA 2197424 Query 36588 CATGTTTTATAAAATATTTTTCGTTTGGTGTTA---GTTTATTCCAATCATTGATATCTT 36644 || || || |||| |||| | || | | || ||||| || | || ||| | Sbjct 2197425 TGTGGGAGATGAAGTATTGCTCGTCCGAAGTCAAACGGTTGTTCCAGTCGTGGAGATCCT 2197484 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704 | || | ||| | || || ||||||| || || ||||||||||| || ||||| | || Sbjct 2197485 TGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCC 2197544 Query 36705 AGAT 36708 |||| Sbjct 2197545 AGAT 2197548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172586093840